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Jonathan Foox
Jonathan Foox
Weill Cornell Medicine
Verified email at amnh.org - Homepage
Title
Cited by
Cited by
Year
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18, 1-19, 2017
3122017
Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection
V Ramlall, PM Thangaraj, C Meydan, J Foox, D Butler, J Kim, B May, ...
Nature medicine 26 (10), 1609-1615, 2020
2972020
The spatial landscape of lung pathology during COVID-19 progression
AF Rendeiro, H Ravichandran, Y Bram, V Chandar, J Kim, C Meydan, ...
Nature 593 (7860), 564-569, 2021
2772021
Fundamental biological features of spaceflight: advancing the field to enable deep-space exploration
E Afshinnekoo, RT Scott, MJ MacKay, E Pariset, E Cekanaviciute, ...
Cell 183 (5), 1162-1184, 2020
2762020
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact
WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ...
Cell 183 (5), 1185-1201. e20, 2020
2162020
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
1422021
DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation
Y Liu, W Rosikiewicz, Z Pan, N Jillette, P Wang, A Taghbalout, J Foox, ...
Genome biology 22, 1-33, 2021
1192021
Investigation of product-derived lymphoma following infusion of piggyBac-modified CD19 chimeric antigen receptor T cells
KP Micklethwaite, K Gowrishankar, BS Gloss, Z Li, JA Street, L Moezzi, ...
Blood, The Journal of the American Society of Hematology 138 (16), 1391-1405, 2021
1192021
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius
JA Rosenfeld, D Reeves, MR Brugler, A Narechania, S Simon, R Durrett, ...
Nature communications 7 (1), 10164, 2016
922016
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study
J Foox, SW Tighe, CM Nicolet, JM Zook, M Byrska-Bishop, WE Clarke, ...
Nature biotechnology 39 (9), 1129-1140, 2021
852021
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
832020
A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood
DL Ng, AC Granados, YA Santos, V Servellita, GM Goldgof, C Meydan, ...
Science advances 7 (6), eabe5984, 2021
812021
Relationships between SARS-CoV-2 in wastewater and COVID-19 clinical cases and hospitalizations, with and without normalization against indicators of human waste
Q Zhan, KM Babler, ME Sharkey, A Amirali, CC Beaver, MM Boone, ...
Acs Es&T Water 2 (11), 1992-2003, 2022
622022
Genomic methods and microbiological technologies for profiling novel and extreme environments for the extreme microbiome project (XMP)
S Tighe, E Afshinnekoo, TM Rock, K McGrath, N Alexander, A McIntyre, ...
Journal of biomolecular techniques: JBT 28 (1), 31, 2017
612017
Role of miR-2392 in driving SARS-CoV-2 infection
JT McDonald, FJ Enguita, D Taylor, RJ Griffin, W Priebe, MR Emmett, ...
Cell reports 37 (3), 2021
602021
The Road to Cnidaria: History of Phylogeny of the Myxozoa
J Foox, ME Siddall
Journal of Parasitology, 2015
572015
Temporal telomere and DNA damage responses in the space radiation environment
JJ Luxton, MJ McKenna, LE Taylor, KA George, SR Zwart, BE Crucian, ...
Cell Reports 33 (10), 2020
562020
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ...
Science translational medicine 15 (708), eabq1533, 2023
542023
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ...
Nature biotechnology 39 (9), 1151-1160, 2021
432021
Clonal hematopoiesis before, during, and after human spaceflight
N Mencia-Trinchant, MJ MacKay, C Chin, E Afshinnekoo, J Foox, ...
Cell reports 33 (10), 2020
402020
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Articles 1–20