Benjamin R. Jack
Title
Cited by
Cited by
Year
Functional sites induce long-range evolutionary constraints in enzymes
BR Jack, AG Meyer, J Echave, CO Wilke
PLoS biology 14 (5), e1002452, 2016
652016
Predicting the genetic stability of engineered DNA sequences with the EFM calculator
BR Jack, SP Leonard, DM Mishler, BA Renda, D Leon, GA Suárez, ...
ACS synthetic biology 4 (8), 939-943, 2015
442015
Phage-bacterial dynamics with spatial structure: self organization around phage sinks can promote increased cell densities
JJ Bull, KA Christensen, C Scott, BR Jack, CJ Crandall, SM Krone
Antibiotics 7 (1), 8, 2018
202018
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
132017
Reduced protein expression in a virus attenuated by codon deoptimization
BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke
G3: Genes, Genomes, Genetics 7 (9), 2957-2968, 2017
122017
Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins
EL Jackson, A Shahmoradi, SJ Spielman, BR Jack, CO Wilke
Protein Science 25 (7), 1341-1353, 2016
82016
Transcript degradation and codon usage regulate gene expression in a lytic phage
BR Jack, DR Boutz, ML Paff, BL Smith, CO Wilke
Virus evolution 5 (2), vez055, 2019
52019
Pinetree: a step-wise gene expression simulator with codon-specific translation rates
BR Jack, CO Wilke
Bioinformatics 35 (20), 4176-4178, 2019
22019
Combinatorial Approaches to Viral Attenuation
ML Paff, BR Jack, BL Smith, JJ Bull, CO Wilke
Msystems 3 (4), 2018
22018
Computational modeling of gene expression dynamics in bacteriophage T7
BR Jack
2019
Investigating viral attenuation by promoter knockout: a systems approach
ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull
PeerJ PrePrints, 2017
2017
SMBE 2017
ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull
Disrupted proteome in a virus attenuated by codon deoptimization
BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke
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Articles 1–13