| Diversity and complexity in DNA recognition by transcription factors G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ... Science 324 (5935), 1720-1723, 2009 | 1157 | 2009 |
| Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ... Cell 133 (7), 1266-1276, 2008 | 716 | 2008 |
| Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo GH Wei, G Badis, MF Berger, T Kivioja, K Palin, M Enge, M Bonke, ... The EMBO journal 29 (13), 2147-2160, 2010 | 674 | 2010 |
| The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ... Nature genetics 48 (4), 427-437, 2016 | 584 | 2016 |
| LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock A Helfer, DA Nusinow, BY Chow, AR Gehrke, ML Bulyk, SA Kay Current Biology 21 (2), 126-133, 2011 | 335 | 2011 |
| Specific DNA-binding by apicomplexan AP2 transcription factors EK De Silva, AR Gehrke, K Olszewski, I León, JS Chahal, ML Bulyk, ... Proceedings of the National Academy of Sciences 105 (24), 8393-8398, 2008 | 294 | 2008 |
| Digits and fin rays share common developmental histories T Nakamura, AR Gehrke, J Lemberg, J Szymaszek, NH Shubin Nature 537 (7619), 225-228, 2016 | 155 | 2016 |
| Deep conservation of wrist and digit enhancers in fish AR Gehrke, I Schneider, E De La Calle-Mustienes, JJ Tena, ... Proceedings of the National Academy of Sciences 112 (3), 803-808, 2015 | 143 | 2015 |
| Acoel genome reveals the regulatory landscape of whole-body regeneration AR Gehrke, E Neverett, YJ Luo, A Brandt, L Ricci, RE Hulett, A Gompers, ... Science 363 (6432), eaau6173, 2019 | 141 | 2019 |
| Neoblasts and the evolution of whole-body regeneration AR Gehrke, M Srivastava Current opinion in genetics & development 40, 131-137, 2016 | 81 | 2016 |
| Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature I Schneider, I Aneas, AR Gehrke, RD Dahn, MA Nobrega, NH Shubin Proceedings of the National Academy of Sciences 108 (31), 12782-12786, 2011 | 75 | 2011 |
| Transcriptional regulation and stabilization of left–right neuronal identity in C. elegans BJ Lesch, AR Gehrke, ML Bulyk, CI Bargmann Genes & development 23 (3), 345-358, 2009 | 51 | 2009 |
| Molecular mechanisms underlying the exceptional adaptations of batoid fins T Nakamura, J Klomp, J Pieretti, I Schneider, AR Gehrke, NH Shubin Proceedings of the National Academy of Sciences 112 (52), 15940-15945, 2015 | 49 | 2015 |
| Cis-regulatory programs in the development and evolution of vertebrate paired appendages AR Gehrke, NH Shubin Seminars in cell & developmental biology 57, 31-39, 2016 | 44 | 2016 |
| Predicting the binding preference of transcription factors to individual DNA k-mers TM Alleyne, L Peña-Castillo, G Badis, S Talukder, MF Berger, AR Gehrke, ... Bioinformatics 25 (8), 1012-1018, 2009 | 41 | 2009 |
| Organogenesis in deep time: A problem in genomics, development, and paleontology J Pieretti, AR Gehrke, I Schneider, N Adachi, T Nakamura, NH Shubin Proceedings of the National Academy of Sciences 112 (16), 4871-4876, 2015 | 31 | 2015 |
| Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences MA Santos, AL Turinsky, S Ong, J Tsai, MF Berger, G Badis, S Talukder, ... Nucleic acids research 38 (22), 7927-7942, 2010 | 4 | 2010 |
| Assessing chromatin accessibility during WBR in acoels AR Gehrke, M Srivastava Whole-Body Regeneration, 549, 2022 | 2 | 2022 |
| A wound-induced differentiation trajectory for neurons RE Hulett, C Rivera-López, AR Gehrke, A Gompers, M Srivastava Proceedings of the National Academy of Sciences 121 (29), e2322864121, 2024 | 1 | 2024 |
| Organoid culture promotes dedifferentiation of mouse myoblasts into stem cells capable of complete muscle regeneration FD Price, MN Matyas, AR Gehrke, W Chen, EA Wolin, KM Holton, ... Nature Biotechnology, 1-15, 2024 | | 2024 |
