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Jason Papin
Jason Papin
Harrison Distinguished Teaching Professor of Biomedical Engineering, University of Virginia
Verified email at virginia.edu - Homepage
Title
Cited by
Cited by
Year
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
10992013
Applications of genome‐scale metabolic reconstructions
MA Oberhardt, Bě Palsson, JA Papin
Molecular systems biology 5 (1), 320, 2009
9322009
Reconstruction of cellular signalling networks and analysis of their properties
JA Papin, T Hunter, BO Palsson, S Subramaniam
Nature reviews Molecular cell biology 6 (2), 99-111, 2005
6552005
Genome-scale microbial in silico models: the constraints-based approach
ND Price, JA Papin, CH Schilling, BO Palsson
Trends in biotechnology 21 (4), 162-169, 2003
5142003
Comparison of network-based pathway analysis methods
JA Papin, J Stelling, ND Price, S Klamt, S Schuster, BO Palsson
Trends in biotechnology 22 (8), 400-405, 2004
4832004
Metabolic pathways in the post-genome era
JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
Trends in biochemical sciences 28 (5), 250-258, 2003
4422003
Flux balance analysis in the era of metabolomics
JM Lee, EP Gianchandani, JA Papin
Briefings in bioinformatics 7 (2), 140-150, 2006
3472006
Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism
RL Chang, L Ghamsari, A Manichaikul, EFY Hom, S Balaji, W Fu, Y Shen, ...
Molecular systems biology 7 (1), 518, 2011
3382011
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin
Journal of bacteriology 190 (8), 2790-2803, 2008
3062008
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ...
PLoS computational biology 4 (10), e1000210, 2008
3032008
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
J Min Lee, EP Gianchandani, JA Eddy, JA Papin
PLoS computational biology 4 (5), e1000086, 2008
2812008
Integration of expression data in genome-scale metabolic network reconstructions
AS Blazier, JA Papin
Frontiers in physiology 3, 299, 2012
2762012
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
269*2020
Functional integration of a metabolic network model and expression data without arbitrary thresholding
PA Jensen, JA Papin
Bioinformatics 27 (4), 541-547, 2011
2552011
Hierarchical thinking in network biology: the unbiased modularization of biochemical networks
JA Papin, JL Reed, BO Palsson
Trends in biochemical sciences 29 (12), 641-647, 2004
2502004
Multiscale computational models of complex biological systems
J Walpole, JA Papin, SM Peirce
Annual review of biomedical engineering 15, 137-154, 2013
2112013
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
JA Papin, ND Price, Bě Palsson
Genome research 12 (12), 1889-1900, 2002
1952002
Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin
Molecular systems biology 4 (1), 177, 2008
1902008
The application of flux balance analysis in systems biology
EP Gianchandani, AK Chavali, JA Papin
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (3), 372-382, 2010
1812010
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis
ND Price, JA Papin, Bě Palsson
Genome research 12 (5), 760-769, 2002
1712002
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