Philippe Thomas

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Ulf LeserKnowledge Management in Bioinformatics, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
Illés SoltVerified email at gravityrd.com
Jörg HakenbergIllumina, Inc.Verified email at illumina.com
Domonkos TikkGravity R&DVerified email at gravityrd.com
Mariana Lara NevesGerman Federal Institute for Risk AssessmentVerified email at bfr.bund.de
Roman KlingerSenior lecturer, Institut für Maschinelle Sprachverarbeitung, Uni StuttgartVerified email at ims.uni-stuttgart.de
Tim RocktäschelResearcher at DeepMind, Associate Professor at UCLVerified email at cs.ucl.ac.uk
Roland RollerGerman Research Center for Artificial Intelligence (DFKI)Verified email at dfki.de
Leonhard HennigSenior Researcher, Deutsches Forschungszentrum für Künstliche IntelligenzVerified email at dfki.de
Martin Hofmann-ApitiusProfessor für Angewandte Life Science Informatik, Universität BonnVerified email at scai.fraunhofer.de
Johannes StarlingerComputer Science PostDoc, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de
Angela RelógioMSH-Medical School Hamburg and Charité Medical University of Berlin, GermanyVerified email at charite.de
Antonio Jimeno YepesSchool of Computing Technologies, RMIT UniversityVerified email at rmit.edu.au
Hans UszkoreitGiance, DFKI, Saarland UniversityVerified email at coli.uni-sb.de
Sven SchmeierChief Engineer, DFKI GmbHVerified email at dfki.de
Christoph M. FriedrichProfessor for Biomedical Computer Science, University of Applied Sciences and Arts, DortmundVerified email at computer.org
Aleksandra GabryszakGerman Research Center for Artificial Intelligence (DFKI)Verified email at dfki.de
Rong ChenDirector of Clinical Genome Informatics & Assistant Professor, Mount Sinai School of MedicineVerified email at mssm.edu
Nils BlüthgenComputational Modelling in Medicine - Charité - IRI Life SciencesVerified email at sys-bio.net
Marc BuxPhD student, Humboldt-Universität zu BerlinVerified email at informatik.hu-berlin.de

Philippe Thomas

German Research Center for Artificial Intelligence

Verified email at dfki.de

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Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser PLoS computational biology 6 (7), e1000837, 2010	212	2010
Ras-mediated deregulation of the circadian clock in cancer A Relógio, P Thomas, P Medina-Perez, S Reischl, S Bervoets, E Gloc, ... PLoS genetics 10 (5), e1004338, 2014	142	2014
BioCreative III interactive task: an overview C Arighi, P Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC Bioinformatics 12 (Suppl 8), S4, 2011	99	2011
GeneView: a comprehensive semantic search engine for PubMed P Thomas, J Starlinger, A Vowinkel, S Arzt, U Leser Nucleic acids research 40 (W1), W585-W591, 2012	92	2012
Relation Extraction for Drug-Drug Interactions using Ensemble Learning P Thomas, M Neves, I Solt, D Tikk, U Leser DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction at …, 2011	83	2011
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting P Thomas, M Neves, T Rocktäschel, U Leser, U den Linden SemEval, 2013	71	2013
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers P Thomas, R Klinger, L Furlong, M Hofmann-Apitius, C Friedrich BMC Bioinformatics 12 (Suppl 4), S4, 2011	62	2011
Findings of the wmt 2017 biomedical translation shared task AJ Yepes, A Névéol, M Neves, K Verspoor, O Bojar, A Boyer, C Grozea, ... Proceedings of the Second Conference on Machine Translation, 234-247, 2017	39	2017
A detailed error analysis of 13 kernel methods for protein-protein interaction extraction D Tikk, I Solt, P Thomas, U Leser BMC bioinformatics 14 (1), 1-20, 2013	39	2013
SETH detects and normalizes genetic variants in text P Thomas, T Rocktäschel, J Hakenberg, Y Lichtblau, U Leser Bioinformatics 32 (18), 2883-2885, 2016	35	2016
Improving Distantly Supervised Extraction of Drug-Drug and Protein-Protein Interactions T Bobic, R Klinger, P Thomas, M Hofmann-Apitius, S Birlinghoven, ... ROBUS-UNSUP 2012: Joint Workshop on Unsupervised and Semi-Supervised …, 2012	34	2012
Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach R Lehmann, L Childs, P Thomas, M Abreu, L Fuhr, H Herzel, U Leser, ... PloS one 10 (5), e0126283, 2015	32	2015
Not all links are equal: exploiting dependency types for the extraction of protein-protein interactions from text P Thomas, S Pietschmann, I Solt, D Tikk, U Leser BioNLP 2011 Workshop, 2011, 1, 2011	27	2011
Classical Hodgkin lymphoma shows epigenetic features of an abortive plasma cellular differentiation V Seitz, PE Thomas, K Zimmermann, U Paul, A Ehlers, M Joosten, ... Haematologica, haematol. 2010.031138 v1, 2011	26	2011
Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts J Hakenberg, WY Cheng, P Thomas, YC Wang, AV Uzilov, R Chen BMC bioinformatics 17 (1), 1-13, 2016	22	2016
Learning protein–protein interaction extraction using distant supervision P Thomas, I Solt, R Klinger, U Leser Proceedings of Workshop on Robust Unsupervised and Semisupervised Methods in …, 2011	22	2011
Computer-assisted curation of a human regulatory core network from the biological literature P Thomas, P Durek, I Solt, B Klinger, F Witzel, P Schulthess, Y Mayer, ... Bioinformatics 31 (8), 1258-1266, 2015	18	2015
Twitter Geolocation Prediction Using Neural Networks P Thomas, L Hennig International Conference of the German Society for Computational Linguistics …, 2017	17	2017
Clickbait identification using neural networks P Thomas arXiv preprint arXiv:1710.08721, 2017	16	2017
Weakly Labeled Corpora as Silver Standard for Drug-Drug and Protein-Protein Interaction P Thomas, T Bobic, M Hofmann-Apitius, U Leser, R Klinger Third Workshop on Building and Evaluating Resources for Biomedical Text …, 2012	16	2012

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