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Ylstra Bauke
Ylstra Bauke
VU University Medical Center
Geverifieerd e-mailadres voor vumc.nl
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Assembly of microarrays for genome-wide measurement of DNA copy number
AM Snijders, N Nowak, R Segraves, S Blackwood, N Brown, J Conroy, ...
Nature genetics 29 (3), 263-264, 2001
12312001
Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features
M Kool, J Koster, J Bunt, NE Hasselt, A Lakeman, P Van Sluis, D Troost, ...
PloS one 3 (8), e3088, 2008
8322008
RNA-Seq of tumor-educated platelets enables blood-based pan-cancer, multiclass, and molecular pathway cancer diagnostics
MG Best, N Sol, I Kooi, J Tannous, BA Westerman, F Rustenburg, ...
Cancer cell 28 (5), 666-676, 2015
8252015
Mismatch Repair Status and BRAF Mutation Status in Metastatic Colorectal Cancer Patients: A Pooled Analysis of the CAIRO, CAIRO2, COIN, and FOCUS Studies
S Venderbosch, ID Nagtegaal, TS Maughan, CG Smith, JP Cheadle, ...
Clinical Cancer Research 20 (20), 5322-5330, 2014
7262014
Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene
DG Albertson, B Ylstra, R Segraves, C Collins, SH Dairkee, D Kowbel, ...
Nature genetics 25 (2), 144-146, 2000
7252000
Recruitment to the nuclear periphery can alter expression of genes in human cells
LE Finlan, D Sproul, I Thomson, S Boyle, E Kerr, P Perry, B Ylstra, ...
PLoS genetics 4 (3), e1000039, 2008
6572008
Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes
D Koppers-Lalic, M Hackenberg, IV Bijnsdorp, MAJ van Eijndhoven, ...
Cell reports 8 (6), 1649-1658, 2014
6082014
Molecular basis of bortezomib resistance: proteasome subunit β5 (PSMB5) gene mutation and overexpression of PSMB5 protein
R Oerlemans, NE Franke, YG Assaraf, J Cloos, I van Zantwijk, CR Berkers, ...
Blood, The Journal of the American Society of Hematology 112 (6), 2489-2499, 2008
5272008
DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly
I Scheinin, D Sie, H Bengtsson, MA Van De Wiel, AB Olshen, ...
Genome research 24 (12), 2022-2032, 2014
4202014
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
SF Chin, AE Teschendorff, JC Marioni, Y Wang, NL Barbosa-Morais, ...
Genome biology 8, 1-17, 2007
3782007
Copy number signatures and mutational processes in ovarian carcinoma
G Macintyre, TE Goranova, D De Silva, D Ennis, AM Piskorz, M Eldridge, ...
Nature genetics 50 (9), 1262-1270, 2018
3752018
Breast tumor copy number aberration phenotypes and genomic instability
J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, ...
BMC cancer 6, 1-13, 2006
3642006
IDH mutation status and role of WHO grade and mitotic index in overall survival in grade II–III diffuse gliomas
A Olar, KM Wani, KD Alfaro-Munoz, LE Heathcock, HF van Thuijl, ...
Acta neuropathologica 129, 585-596, 2015
3572015
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
C Naughton, N Avlonitis, S Corless, JG Prendergast, IK Mati, PP Eijk, ...
Nature structural & molecular biology 20 (3), 387-395, 2013
3552013
Genome-wide DNA copy number alterations in head and neck squamous cell carcinomas with or without oncogene-expressing human papillomavirus
SJ Smeets, BJM Braakhuis, S Abbas, PJF Snijders, B Ylstra, ...
Oncogene 25 (17), 2558-2564, 2006
3172006
CGHcall: calling aberrations for array CGH tumor profiles
MA Van De Wiel, KI Kim, SJ Vosse, WN Van Wieringen, SM Wilting, ...
Bioinformatics 23 (7), 892-894, 2007
3042007
Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression
B Carvalho, C Postma, S Mongera, E Hopmans, S Diskin, MA van de Wiel, ...
Gut 58 (1), 79-89, 2009
2862009
Microarray‐based comparative genomic hybridization and its applications in human genetics
AE Oostlander, GA Meijer, B Ylstra
Clinical genetics 66 (6), 488-495, 2004
2862004
BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH)
B Ylstra, P van den IJssel, B Carvalho, RH Brakenhoff, GA Meijer
Nucleic acids research 34 (2), 445-450, 2006
2722006
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping
PJP De Vree, E De Wit, M Yilmaz, M Van De Heijning, P Klous, ...
Nature biotechnology 32 (10), 1019-1025, 2014
2692014
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