Stephanie J Spielman
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Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
Maximum allowed solvent accessibilites of residues in proteins
MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke
PloS one 8 (11), e80635, 2013
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2
Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ...
Journal of Cell Biology 216 (1), 167-179, 2017
The Relationship between dN/dS and Scaled Selection Coefficients
SJ Spielman, CO Wilke
Molecular biology and evolution 32 (4), 1097-1108, 2015
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
Pyvolve: a flexible python module for simulating sequences along phylogenies
SJ Spielman, CO Wilke
PloS one 10 (9), e0139047, 2015
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79 (3-4), 130-142, 2014
Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors
SJ Spielman, CO Wilke
Journal of molecular evolution 76 (3), 172-182, 2013
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
AG Meyer, SJ Spielman, T Bedford, CO Wilke
Virus evolution 1 (1), 2015
Extensively parameterized mutation–selection models reliably capture site-specific selective constraint
SJ Spielman, CO Wilke
Molecular biology and evolution 33 (11), 2990-3002, 2016
Evolution of viral genomes: interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, SLK Pond
Evolutionary Genomics, 427-468, 2019
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors
SJ Spielman, K Kumar, CO Wilke
PeerJ 3, e773, 2015
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation
SJ Spielman, S Wan, CO Wilke
Genetics 204 (2), 499-511, 2016
Relative evolutionary rate inference in HyPhy with LEISR
SJ Spielman, SL Kosakovsky Pond
PeerJ 6, e4339, 2018
Relative evolutionary rates in proteins are largely insensitive to the substitution model
SJ Spielman, SL Kosakovsky Pond
Molecular Biology and Evolution, 2018
Limited utility of residue masking for positive-selection inference
SJ Spielman, ET Dawson, CO Wilke
Molecular biology and evolution 31 (9), 2496-2500, 2014
Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature
R Maddamsetti, DT Johnson, SJ Spielman, KL Petrie, DS Marks, ...
Evolution 72 (10), 2234-2243, 2018
Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins
EL Jackson, A Shahmoradi, SJ Spielman, BR Jack, CO Wilke
Protein Science 25 (7), 1341-1353, 2016
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