| The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis TM Walker, P Miotto, CU Köser, PW Fowler, J Knaggs, Z Iqbal, M Hunt, ... The Lancet Microbe 3 (4), e265-e273, 2022 | 138 | 2022 |
| Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe M Hunt, P Bradley, SG Lapierre, S Heys, M Thomsit, MB Hall, KM Malone, ... Wellcome open research 4, 2019 | 119 | 2019 |
| Mycobacterium tuberculosis Complex Members Adapted to Wild and Domestic Animals KM Malone, SV Gordon Strain Variation in the Mycobacterium tuberculosis Complex: Its Role in …, 2017 | 97 | 2017 |
| Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences GA Blackwell, M Hunt, KM Malone, L Lima, G Horesh, BTF Alako, ... PLoS biology 19 (11), e3001421, 2021 | 72 | 2021 |
| Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the … KM Malone, K Rue-Albrecht, DA Magee, K Conlon, OT Schubert, ... Microbial genomics 4 (3), e000163, 2018 | 64 | 2018 |
| Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle B Villarreal-Ramos, S Berg, A Whelan, S Holbert, F Carreras, FJ Salguero, ... Scientific Reports 8 (1), 894, 2018 | 53 | 2018 |
| A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics CRyPTIC Consortium PLoS biology 20 (8), e3001721, 2022 | 48 | 2022 |
| Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis CRyPTIC Consortium European Respiratory Journal 60 (4), 2022 | 45 | 2022 |
| Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97 KM Malone, D Farrell, TP Stuber, OT Schubert, R Aebersold, ... Genome announcements 5 (14), 10.1128/genomea. 00157-17, 2017 | 45 | 2017 |
| Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... Genome biology 22, 1-30, 2021 | 36 | 2021 |
| Relaxed selection drives a noisy noncoding transcriptome in members of the Mycobacterium tuberculosis complex AM Dinan, P Tong, AJ Lohan, KM Conlon, AA Miranda-CasoLuengo, ... MBio 5 (4), 10.1128/mbio. 01169-14, 2014 | 23 | 2014 |
| Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis D Farrell, G Jones, C Pirson, K Malone, K Rue-Albrecht, AJ Chubb, ... Microbial genomics 2 (8), e000071, 2016 | 22 | 2016 |
| Deciphering bedaquiline and clofazimine resistance in tuberculosis: an evolutionary medicine approach L Sonnenkalb, J Carter, A Spitaleri, Z Iqbal, M Hunt, K Malone, C Utpatel, ... Biorxiv, 2021.03. 19.436148, 2021 | 20 | 2021 |
| Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe. Wellcome Open Res. 2019; 4: 191 M Hunt, P Bradley, SG Lapierre, S Heys, M Thomsit, MB Hall, KM Malone, ... | 19 | |
| Placental inflammation leads to abnormal embryonic heart development EJ Ward, S Bert, S Fanti, KM Malone, RT Maughan, C Gkantsinikoudi, ... Circulation 147 (12), 956-972, 2023 | 18 | 2023 |
| Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes M Hunt, B Letcher, KM Malone, G Nguyen, MB Hall, RM Colquhoun, ... Genome Biology 23 (1), 147, 2022 | 16 | 2022 |
| Antibiotic methylation: a new mechanism of antimicrobial resistance KM Malone, SV Gordon Trends in microbiology 24 (10), 771-772, 2016 | 16 | 2016 |
| Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis L Sonnenkalb, JJ Carter, A Spitaleri, Z Iqbal, M Hunt, KM Malone, ... The Lancet Microbe 4 (5), e358-e368, 2023 | 14 | 2023 |
| A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth … PW Fowler, C Wright, H Spiers, T Zhu, EML Baeten, SW Hoosdally, ... Elife 11, e75046, 2022 | 10 | 2022 |
| Nucleotide-resolution bacterial pan-genomics with reference graphs RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ... BioRxiv, 2020.11. 12.380378, 2020 | 9 | 2020 |
