Marta Szachniuk
Marta Szachniuk
Institute of Computing Science, Poznan University of Technology
Geverifieerd e-mailadres voor cs.put.poznan.pl - Homepage
Geciteerd door
Geciteerd door
Automated 3D structure composition for large RNAs
M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ...
Nucleic acids research 40 (14), e112-e112, 2012
New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure
M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ...
Acta Biochimica Polonica 63 (4), 737-744, 2016
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
RNA 21 (6), 1-19, 2015
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
M Popenda, M Szachniuk, M Blazewicz, S Wasik, EK Burke, J Blazewicz, ...
BMC bioinformatics 11, 1-12, 2010
Automated RNA 3D structure prediction with RNAComposer
M Biesiada, KJ Purzycka, M Szachniuk, J Blazewicz, RW Adamiak
RNA Structure Determination: Methods and Protocols, 199-215, 2016
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
Rna 26 (8), 982-995, 2020
RNApdbee 2.0: multifunctional tool for RNA structure annotation
T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ...
Nucleic acids research 46 (W1), W30-W35, 2018
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures
M Popenda, M Błażewicz, M Szachniuk, RW Adamiak
Nucleic Acids Research 36 (suppl_1), D386-D391, 2008
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs
M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ...
Nucleic acids research 42 (W1), W368-W372, 2014
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ...
Nucleic acids research 48 (2), 576-588, 2020
Automated 3D RNA structure prediction using the RNAComposer method for riboswitches
RWA K.J. Purzycka, M. Popenda, M. Szachniuk, M. Antczak, P. Lukasiak, J ...
Methods in Enzymology 553, 3-34, 2014
Sorting signal targeting mRNA into hepatic extracellular vesicles
N Szostak, F Royo, A Rybarczyk, M Szachniuk, J Blazewicz, A del Sol, ...
RNA biology 11 (7), 836-844, 2014
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation
M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk
Bioinformatics 34 (8), 1304-1312, 2018
MCQ4Structures to compute similarity of molecule structures
T Zok, M Popenda, M Szachniuk
Central European Journal of Operations Research 22, 457-473, 2014
New in silico approach to assessing RNA secondary structures with non-canonical base pairs
A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ...
BMC bioinformatics 16, 1-12, 2015
When will RNA get its AlphaFold moment?
B Schneider, BA Sweeney, A Bateman, J Cerny, T Zok, M Szachniuk
Nucleic Acids Research 51 (18), 9522-9532, 2023
The orderly colored longest path problem-a survey of applications and new algorithms
M Szachniuk, M Cristina De Cola, G Felici, J Blazewicz
RAIRO-Operations Research-Recherche Opérationnelle 48 (1), 25-51, 2014
RNAlyzer—novel approach for quality analysis of RNA structural models
P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ...
Nucleic Acids Research 41 (12), 5978-5990, 2013
RNA tertiary structure determination: NOE pathways construction by tabu search
J Blazewicz, M Szachniuk, A Wojtowicz
Bioinformatics 21 (10), 2356-2361, 2005
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