| Automated 3D structure composition for large RNAs M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ... Nucleic acids research 40 (14), e112-e112, 2012 | 624 | 2012 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 173 | 2017 |
| RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... RNA 21 (6), 1-19, 2015 | 171 | 2015 |
| New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016 | 163 | 2016 |
| RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures M Popenda, M Szachniuk, M Blazewicz, S Wasik, EK Burke, J Blazewicz, ... BMC bioinformatics 11 (1), 1-12, 2010 | 158 | 2010 |
| Automated RNA 3D structure prediction with RNAComposer M Biesiada, KJ Purzycka, M Szachniuk, J Blazewicz, RW Adamiak RNA Structure Determination: Methods and Protocols, 199-215, 2016 | 112 | 2016 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... RNA 26 (8), 982-995, 2020 | 92 | 2020 |
| RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures M Popenda, M Błażewicz, M Szachniuk, RW Adamiak Nucleic Acids Research 36 (suppl_1), D386-D391, 2008 | 92 | 2008 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 91 | 2018 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 74 | 2014 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 51 | 2020 |
| Automated 3D RNA structure prediction using the RNAComposer method for riboswitches RWA K.J. Purzycka, M. Popenda, M. Szachniuk, M. Antczak, P. Lukasiak, J ... Methods in Enzymology 553, 3-34, 2014 | 48* | 2014 |
| Sorting signal targeting mRNA into hepatic extracellular vesicles N Szostak, F Royo, A Rybarczyk, M Szachniuk, J Blazewicz, A del Sol, ... RNA biology 11 (7), 836-844, 2014 | 41 | 2014 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16 (1), 1-12, 2015 | 36 | 2015 |
| MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22, 457-473, 2014 | 35 | 2014 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 32 | 2018 |
| RNA tertiary structure determination: NOE pathways construction by tabu search J Blazewicz, M Szachniuk, A Wojtowicz Bioinformatics 21 (10), 2356-2361, 2005 | 29 | 2005 |
| RNAlyzer—novel approach for quality analysis of RNA structural models P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ... Nucleic Acids Research 41 (12), 5978-5990, 2013 | 28 | 2013 |
| The orderly colored longest path problem-a survey of applications and new algorithms M Szachniuk, M Cristina De Cola, G Felici, J Blazewicz RAIRO-Operations Research-Recherche Opérationnelle 48 (1), 25-51, 2014 | 26 | 2014 |
| RNAssess - a webserver for quality assessment of RNA 3D structures P Lukasiak, M Antczak, T Ratajczak, M Szachniuk, M Popenda, ... Nucleic Acids Research, 2015 | 25 | 2015 |
Mariusz PopendaDr chemii, PANGeverifieerd e-mailadres voor ibch.poznan.pl
