A new distance for high level RNA secondary structure comparison J Allali, MF Sagot
IEEE/ACM transactions on computational biology and bioinformatics 2 (1), 3-14, 2005
75 2005 The at-most -deep factor tree J Allali, MF Sagot
35 2004 Adaptation of string matching algorithms for identification of near-duplicate music documents M Robine, P Hanna, P Ferraro, J Allali
Workshop on plagiarism analysis, authorship identification, and near …, 2007
32 2007 BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms J Allali, C Saule, C Chauve, Y d’Aubenton-Carafa, A Denise, C Drevet, ...
Advances in bioinformatics 2012, 2012
29 2012 Improvements of alignment algorithms for polyphonic music retrieval P Hanna, M Robine, P Ferraro, J Allali
Computer Music Modeling and Retrieval 2008, 244-251, 2008
26 2008 Local transpositions in alignment of polyphonic musical sequences J Allali, P Ferraro, P Hanna, C Iliopoulos
International Symposium on String Processing and Information Retrieval, 26-38, 2007
26 2007 Rhoban Football Club: RoboCup Humanoid Kid-Size 2023 Champion Team Paper J Allali, A Boussicault, C Brocaire, C Dobigeon, M Duclusaud, C Gaspard, ...
Robot World Cup, 325-336, 2023
23 2023 Novel tree edit operations for RNA secondary structure comparison J Allali, MF Sagot
Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004
22 2004 A multiple layer model to compare RNA secondary structures J Allali, MF Sagot
Software: Practice and Experience 38 (8), 775-792, 2008
19 2008 A multiple graph layers model with application to RNA secondary structures comparison J Allali, MF Sagot
String Processing and Information Retrieval: 12th International Conference …, 2005
12 2005 Polyphonic alignment algorithms for symbolic music retrieval J Allali, P Ferraro, P Hanna, M Robine
International Symposium on Computer Music Modeling and Retrieval, 466-482, 2009
10 2009 Toward a general framework for polyphonic comparison J Allali, P Ferraro, P Hanna, C Iliopoulos, M Robine
Fundamenta Informaticae 97 (3), 331-346, 2009
10 2009 Indexing gapped-factors using a tree P Peterlongo, J Allali, MF Sagot
International Journal of Foundations of Computer Science 19 (01), 71-87, 2008
7 2008 A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets A Ayllón-Benítez, F Mougin, J Allali, R Thiébaut, P Thébault
PLoS One 13 (11), e0208037, 2018
6 2018 The gapped-factor tree P Peterlongo, J Allali, MF Sagot
Prague Stringology Conference 2006, 182--196, 2006
6 2006 Rhoban football club–team description paper J Allali, L Gondry, L Hofer, P Laborde-Zubieta, O Ly, S N’Guyen, ...
Technical report, 2019
5 2019 Efficient chaining of seeds in ordered trees J Allali, C Chauve, P Ferraro, AL Gaillard
International Workshop on Combinatorial Algorithms, 260-273, 2010
5 2010 Comparaison de structures secondaires d'ARN J Allali
Université de Marne la Vallée, 2004
5 2004 Chaining sequence/structure seeds for computing RNA similarity L Bourgeade, C Chauve, J Allali
Journal of Computational Biology 22 (3), 205-217, 2015
4 2015 Efficient chaining of seeds in ordered trees J Allali, C Chauve, P Ferraro, AL Gaillard
Journal of Discrete Algorithms 14, 107-118, 2012
4 2012