| Finding motifs in the twilight zone U Keich, PA Pevzner Proceedings of the sixth annual international conference on Computational …, 2002 | 268 | 2002 |
| Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly … HF Oliver, RH Orsi, L Ponnala, U Keich, W Wang, Q Sun, SW Cartinhour, ... BMC genomics 10, 1-22, 2009 | 203 | 2009 |
| Designing seeds for similarity search in genomic DNA J Buhler, U Keich, Y Sun Proceedings of the seventh annual international conference on Research in …, 2003 | 194 | 2003 |
| Target-decoy approach and false discovery rate: when things may go wrong N Gupta, N Bandeira, U Keich, PA Pevzner Journal of the American Society for Mass Spectrometry 22, 1111-1120, 2011 | 178 | 2011 |
| On spaced seeds for similarity search U Keich, M Li, B Ma, J Tromp Discrete applied mathematics 138 (3), 253-263, 2004 | 173 | 2004 |
| Subtle motifs: defining the limits of motif finding algorithms U Keich, PA Pevzner Bioinformatics 18 (10), 1382-1390, 2002 | 88 | 2002 |
| Tandem mass spectrum identification via cascaded search A Kertesz-Farkas, U Keich, WS Noble Journal of proteome research 14 (8), 3027-3038, 2015 | 77 | 2015 |
| Improved false discovery rate estimation procedure for shotgun proteomics U Keich, A Kertesz-Farkas, WS Noble Journal of proteome research 14 (8), 3148-3161, 2015 | 68 | 2015 |
| High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast I Liachko, RA Youngblood, U Keich, MJ Dunham Genome research 23 (4), 698-704, 2013 | 64 | 2013 |
| Improved similarity scores for comparing motifs E Tanaka, T Bailey, CE Grant, WS Noble, U Keich Bioinformatics 27 (12), 1603-1609, 2011 | 63 | 2011 |
| A comprehensive genome-wide map of autonomously replicating sequences in a naive genome I Liachko, A Bhaskar, C Lee, SCC Chung, BK Tye, U Keich PLoS genetics 6 (5), e1000946, 2010 | 61 | 2010 |
| Computing the P-value of the information content from an alignment of multiple sequences N Nagarajan, N Jones, U Keich Bioinformatics 21 (suppl_1), i311-i318, 2005 | 54 | 2005 |
| Genome-wide analysis of bacterial promoter regions E Eskin, U Keich, MS Gelfand, PA Pevzner Biocomputing 2003, 29-40, 2002 | 54 | 2002 |
| On the importance of well-calibrated scores for identifying shotgun proteomics spectra U Keich, WS Noble Journal of proteome research 14 (2), 1147-1160, 2015 | 40 | 2015 |
| GIMSAN: a Gibbs motif finder with significance analysis P Ng, U Keich Bioinformatics 24 (19), 2256-2257, 2008 | 39 | 2008 |
| Averaging strategy to reduce variability in target-decoy estimates of false discovery rate U Keich, K Tamura, WS Noble Journal of proteome research 18 (2), 585-593, 2018 | 38 | 2018 |
| On Lp bounds for Kakeya maximal functions and the Minkowski dimension in ℝ2 U Keich Bulletin of the London Mathematical Society 31 (2), 213-221, 1999 | 35 | 1999 |
| Novel features of ARS selection in budding yeast Lachancea kluyveri I Liachko, E Tanaka, K Cox, SCC Chung, L Yang, A Seher, L Hallas, ... BMC genomics 12, 1-18, 2011 | 27 | 2011 |
| Improving MEME via a two-tiered significance analysis E Tanaka, TL Bailey, U Keich Bioinformatics 30 (14), 1965-1973, 2014 | 25 | 2014 |
| A generalization of the Ahlswede-Daykin inequality R Aharoni, U Keich Discrete Mathematics 152 (1-3), 1-12, 1996 | 20 | 1996 |
