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James Matthew Holt
James Matthew Holt
Senior Scientist, Bioinformatics, Pacific Biosciences
Verified email at pacificbiosciences.com
Title
Cited by
Cited by
Year
Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance
JJ Crowley, V Zhabotynsky, W Sun, S Huang, IK Pakatci, Y Kim, JR Wang, ...
Nature genetics 47 (4), 353-360, 2015
2192015
FMLRC: Hybrid long read error correction using an FM-index
JR Wang, J Holt, L McMillan, CD Jones
BMC bioinformatics 19 (1), 50, 2018
1292018
R2d2 Drives Selfish Sweeps in the House Mouse
JP Didion, AP Morgan, L Yadgary, TA Bell, RC McMullan, ...
Molecular biology and evolution 33 (6), 1381-1395, 2016
502016
Merging of multi-string BWTs with applications
J Holt, L McMillan
Bioinformatics 30 (24), 3524-3531, 2014
502014
Unmanned aerial system collision avoidance using artificial potential fields
J Ruchti, R Senkbeil, J Carroll, J Dickinson, J Holt, S Biaz
Journal of Aerospace Information Systems 11 (3), 140-144, 2014
482014
Kilquist Syndrome: A Novel Syndromic Hearing Loss Disorder Caused by Homozygous Deletion of SLC12A2
EF Macnamara, AE Koehler, P D’Souza, T Estwick, P Lee, G Vezina, ...
Human mutation, 2019
412019
A novel multi-alignment pipeline for high-throughput sequencing data
S Huang, J Holt, CY Kao, L McMillan, W Wang
Database 2014, bau057, 2014
412014
Long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders
SM Hiatt, JMJ Lawlor, LH Handley, RC Ramaker, BB Rogers, ...
Human Genetics and Genomics Advances, 100023, 2021
382021
Collision avoidance techniques for unmanned aerial vehicles
B Gardiner, W Ahmad, T Cooper, M Haveard, J Holt, S Biaz
Auburn University 8 (07), 2011
322011
Genome sequencing for early-onset or atypical dementia: high diagnostic yield and frequent observation of multiple contributory alleles
JN Cochran, EC McKinley, M Cochran, MD Amaral, BA Moyers, ...
Molecular Case Studies 5 (6), a003491, 2019
292019
Constructing Burrows-Wheeler transforms of large string collections via merging
J Holt, L McMillan
Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014
202014
The evolutionary fates of a large segmental duplication in mouse
AP Morgan, JM Holt, RC McMullan, TA Bell, AMF Clayshulte, JP Didion, ...
Genetics 204 (1), 267-285, 2016
182016
The many evolutionary fates of a large segmental duplication in mouse
AP Morgan, JM Holt, RC McMullan, TA Bell, AMF Clayshulte, JP Didion, ...
bioRxiv, 043687, 2016
18*2016
Comparison of unmanned aerial system collision avoidance algorithms in a simulated environment
J Holt, S Biaz, CA Aji
Journal of Guidance, Control, and Dynamics 36 (3), 881-883, 2013
182013
Read annotation pipeline for high-throughput sequencing data
J Holt, S Huang, L McMillan, W Wang
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
172013
UAV collision avoidance using artificial potential fields
J Ruchti, R Senkbeil, J Carroll, J Dickinson, J Holt, S Biaz
Computer Science and Software Engineering Department, Auburn University …, 2011
162011
VarSight: prioritizing clinically reported variants with binary classification algorithms
JM Holt, B Wilk, CL Birch, DM Brown, M Gajapathy, AC Moss, ...
BMC Bioinformatics 20, 1-10, 2019
152019
A symbiotic simulation architecture for evaluating UAVs collision avoidance techniques
J Holt, S Biaz, L Yilmaz, CA Aji
Journal of Simulation 8, 64-75, 2014
152014
The landscape of reported VUS in multi-gene panel and genomic testing: Time for a change
HL Rehm, JT Alaimo, S Aradhya, P Bayrak-Toydemir, H Best, R Brandon, ...
Genetics in Medicine 25 (12), 100947, 2023
142023
Polishing de novo nanopore assemblies of bacteria and eukaryotes with FMLRC2
QXC Mak, RR Wick, JM Holt, JR Wang
Molecular Biology and Evolution 40 (3), msad048, 2023
122023
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