Joseph R. Nery
Title
Cited by
Cited by
Year
Human DNA methylomes at base resolution show widespread epigenomic differences
R Lister, M Pelizzola, RH Dowen, RD Hawkins, G Hon, J Tonti-Filippini, ...
nature 462 (7271), 315-322, 2009
42872009
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
41352015
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
R Lister, M Pelizzola, YS Kida, RD Hawkins, JR Nery, G Hon, ...
Nature 471 (7336), 68-73, 2011
15932011
Global epigenomic reconfiguration during mammalian brain development
R Lister, EA Mukamel, JR Nery, M Urich, CA Puddifoot, ND Johnson, ...
Science 341 (6146), 2013
14582013
Widespread dynamic DNA methylation in response to biotic stress
RH Dowen, M Pelizzola, RJ Schmitz, R Lister, JM Dowen, JR Nery, ...
Proceedings of the National Academy of Sciences 109 (32), E2183-E2191, 2012
7672012
Cistrome and epicistrome features shape the regulatory DNA landscape
RC O’Malley, SC Huang, L Song, MG Lewsey, A Bartlett, JR Nery, M Galli, ...
Cell 165 (5), 1280-1292, 2016
6692016
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
W Xie, MD Schultz, R Lister, Z Hou, N Rajagopal, P Ray, JW Whitaker, ...
Cell 153 (5), 1134-1148, 2013
6312013
Patterns of population epigenomic diversity
RJ Schmitz, MD Schultz, MA Urich, JR Nery, M Pelizzola, O Libiger, A Alix, ...
Nature 495 (7440), 193-198, 2013
4962013
Comparison of the transcriptional landscapes between human and mouse tissues
S Lin, Y Lin, JR Nery, MA Urich, A Breschi, CA Davis, A Dobin, C Zaleski, ...
Proceedings of the National Academy of Sciences 111 (48), 17224-17229, 2014
4812014
Human body epigenome maps reveal noncanonical DNA methylation variation
MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ...
Nature 523 (7559), 212-216, 2015
4722015
Epigenomic signatures of neuronal diversity in the mammalian brain
A Mo, EA Mukamel, FP Davis, C Luo, GL Henry, S Picard, MA Urich, ...
Neuron 86 (6), 1369-1384, 2015
4242015
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions
T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ...
Cell 166 (2), 492-505, 2016
3732016
Abnormalities in human pluripotent cells due to reprogramming mechanisms
H Ma, R Morey, RC O'Neil, Y He, B Daughtry, MD Schultz, M Hariharan, ...
Nature 511 (7508), 177-183, 2014
3152014
Molecular criteria for defining the naive human pluripotent state
TW Theunissen, M Friedli, Y He, E Planet, RC O’Neil, S Markoulaki, ...
Cell stem cell 19 (4), 502-515, 2016
3122016
Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
UV Pedmale, SC Huang, M Zander, BJ Cole, J Hetzel, K Ljung, PAB Reis, ...
Cell 164 (1-2), 233-245, 2016
3112016
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
KN Chang, S Zhong, MT Weirauch, G Hon, M Pelizzola, H Li, SC Huang, ...
elife 2, e00675, 2013
2762013
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ...
Science 357 (6351), 600-604, 2017
2592017
A transcription factor hierarchy defines an environmental stress response network
L Song, SC Huang, A Wise, R Castanon, JR Nery, H Chen, M Watanabe, ...
Science 354 (6312), 2016
2382016
Integration of omic networks in a developmental atlas of maize
JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu, MA Urich, JR Nery, ...
Science 353 (6301), 814-818, 2016
2332016
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ...
Genome research 23 (10), 1663-1674, 2013
2202013
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