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Vagner Fonseca
Vagner Fonseca
PhD Bioinformatics and PhD in Virology
Geverifieerd e-mailadres voor uneb.br - Homepage
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Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
14512021
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medrxiv, 2020.12. 21.20248640, 2020
11942020
Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma
S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig, J Giandhari, ...
Nature 593 (7857), 142-146, 2021
6642021
Sixteen novel lineages of SARS-CoV-2 in South Africa
H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ...
Nature medicine 27 (3), 440-446, 2021
3622021
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, J Góes de Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
3172018
Genome Detective: an automated system for virus identification from high-throughput sequencing data
M Vilsker, Y Moosa, S Nooij, V Fonseca, Y Ghysens, K Dumon, ...
Bioinformatics 35 (5), 871-873, 2019
3032019
Genomic evidence of SARS-CoV-2 reinfection involving E484K spike mutation, Brazil
CKV Nonaka, MM Franco, T Gräf, CA de Lorenzo Barcia, ...
Emerging infectious diseases 27 (5), 1522, 2021
2532021
Kosakovsky Pond SL, Weaver S, Martin D, Lessells RJ, Bhiman JN, Williamson C, de Oliveira T. Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
2142021
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
S Cleemput, W Dumon, V Fonseca, W Abdool Karim, M Giovanetti, ...
Bioinformatics 36 (11), 3552-3555, 2020
1892020
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
1852021
Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
1452021
Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report
J Giandhari, S Pillay, E Wilkinson, H Tegally, I Sinayskiy, M Schuld, ...
International Journal of Infectious Diseases 103, 234-241, 2021
1052021
Yellow fever virus reemergence and spread in Southeast Brazil, 2016–2019
M Giovanetti, MCL de Mendonça, V Fonseca, MA Mares-Guia, A Fabri, ...
Journal of Virology 94 (1), 10.1128/jvi. 01623-19, 2019
912019
Whole genome sequencing of SARS-CoV-2: adapting Illumina protocols for quick and accurate outbreak investigation during a pandemic
S Pillay, J Giandhari, H Tegally, E Wilkinson, B Chimukangara, R Lessells, ...
Genes 11 (8), 949, 2020
852020
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ...
Cell host & microbe 29 (7), 1093-1110, 2021
832021
Current affairs of microbial genome-wide association studies: approaches, bottlenecks and analytical pitfalls
JE San, S Baichoo, A Kanzi, Y Moosa, R Lessells, V Fonseca, J Mogaka, ...
Frontiers in microbiology 10, 3119, 2020
722020
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ...
PLoS neglected tropical diseases 13 (5), e0007231, 2019
662019
Fatal outcome of chikungunya virus infection in Brazil
STS de Lima, WM de Souza, JW Cavalcante, D da Silva Candido, ...
Clinical Infectious Diseases 73 (7), e2436-e2443, 2021
582021
Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil
M Giovanetti, SN Slavov, V Fonseca, E Wilkinson, H Tegally, JSL Patané, ...
Nature Microbiology 7 (9), 1490-1500, 2022
572022
Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic
M Giovanetti, V Fonseca, E Wilkinson, H Tegally, EJ San, CL Althaus, ...
Virus evolution 8 (1), veac024, 2022
562022
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Artikelen 1–20