| Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model N Bonzanni, A Garg, KA Feenstra, J Schütte, S Kinston, ... Bioinformatics 29 (13), i80-i88, 2013 | 91 | 2013 |
| An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability J Schütte, H Wang, S Antoniou, A Jarratt, NK Wilson, J Riepsaame, ... Elife 5, e11469, 2016 | 66 | 2016 |
| PTEN loss in E-cadherin-deficient mouse mammary epithelial cells rescues apoptosis and results in development of classical invasive lobular carcinoma MC Boelens, M Nethe, S Klarenbeek, JR de Ruiter, E Schut, N Bonzanni, ... Cell reports 16 (8), 2087-2101, 2016 | 62 | 2016 |
| Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development N Bonzanni, E Krepska, KA Feenstra, W Fokkink, T Kielmann, H Bal, ... Bioinformatics 25 (16), 2049-2056, 2009 | 60 | 2009 |
| What can formal methods bring to systems biology? N Bonzanni, KA Feenstra, W Fokkink, E Krepska FM 2009: Formal Methods: Second World Congress, Eindhoven, The Netherlands …, 2009 | 38 | 2009 |
| Next‐generation immunosequencing reveals pathological T‐cell architecture in autoimmune hepatitis C Schultheiß, D Simnica, E Willscher, A Oberle, L Fanchi, N Bonzanni, ... Hepatology 73 (4), 1436-1448, 2021 | 26 | 2021 |
| Design issues for qualitative modelling of biological cells with Petri nets E Krepska, N Bonzanni, A Feenstra, W Fokkink, T Kielmann, H Bal, ... Formal Methods in Systems Biology: First International Workshop, FMSB 2008 …, 2008 | 26 | 2008 |
| High-throughput immunogenetics reveals a lack of physiological T cell clusters in patients with autoimmune cytopenias D Simnica, S Schliffke, C Schultheiß, N Bonzanni, LF Fanchi, N Akyüz, ... Frontiers in Immunology 10, 1897, 2019 | 19 | 2019 |
| Petri nets are a biologist’s best friend N Bonzanni, KA Feenstra, W Fokkink, J Heringa Formal Methods in Macro-Biology: First International Conference, FMMB 2014 …, 2014 | 19 | 2014 |
| BioASF: a framework for automatically generating executable pathway models specified in BioPAX R Haydarlou, A Jacobsen, N Bonzanni, KA Feenstra, S Abeln, J Heringa Bioinformatics 32 (12), i60-i69, 2016 | 17 | 2016 |
| Response of metastatic mouse invasive lobular carcinoma to mTOR inhibition is partly mediated by the adaptive immune system S Klarenbeek, CW Doornebal, SM Kas, N Bonzanni, J Bhin, ... Oncoimmunology 9 (1), 1724049, 2020 | 13 | 2020 |
| Deep sequencing of bone marrow microenvironments of patients with del (5q) myelodysplastic syndrome reveals imprints of antigenic selection as well as generation of novel T … T Mährle, N Akyüz, P Fuchs, N Bonzanni, D Simnica, U Germing, ... Haematologica 104 (7), 1355, 2019 | 9 | 2019 |
| ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites SH Lelieveld, J Schütte, MJJ Dijkstra, P Bawono, SJ Kinston, B Göttgens, ... Nucleic acids research 44 (8), e72-e72, 2016 | 9 | 2016 |
| Modeling symport/antiport p systems with a class of hierarchical Petri nets L Bernardinello, N Bonzanni, M Mascheroni, L Pomello Membrane Computing: 8th International Workshop, WMC 2007 Thessaloniki …, 2007 | 6 | 2007 |
| The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae N Bonzanni, N Zhang, SG Oliver, J Fisher Bioinformatics 27 (13), i283-i287, 2011 | 5 | 2011 |
| Towards Executable Biology N Bonzanni | 2 | 2012 |
| Monitoring the effect of immunomodulatory treatment on the immune repertoire using the IGX platform P Fuchs, H van den Ham, N Akyüz, D Simnica, M Binder, N Bonzanni European Journal of Cancer 110, S29-S30, 2019 | | 2019 |
| Peripheral blood T cell repertoires are biased in patients with autoimmune cytopenias showing unique T cell clusters with common antigen recognition D Statovci, S Schliffke, N Akyuez, B Goesch, N Bonzanni, C Casar, ... ONCOLOGY RESEARCH AND TREATMENT 41, 103-103, 2018 | | 2018 |
| A fully validated blood stem/progenitor cell regulatory network reveals mechanisms of cell state stabilisation J Schütte, H Wang, A Jarrett, J Riepsaame, N Wilson, S Antoniou, ... Experimental Hematology 43 (9), S47, 2015 | | 2015 |
| PI3K signalling in mouse models of invasive lobular breast cancer S Klarenbeek, C Doornebal, N Bonzanni, S Kas, I van der Heijden, ... Journal of Comparative Pathology 1 (152), 46, 2015 | | 2015 |
Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
