| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 625 | 2008 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 538 | 2016 |
| RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 513 | 2013 |
| Operons in Escherichia coli: Genomic analyses and predictions H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides Proceedings of the National Academy of Sciences 97 (12), 6652-6657, 2000 | 481 | 2000 |
| RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions H Salgado, S Gama-Castro, M Peralta-Gil, E Diaz-Peredo, ... Nucleic acids research 34 (suppl_1), D394-D397, 2006 | 479 | 2006 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 467 | 2010 |
| RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... Nucleic acids research 47 (D1), D212-D220, 2019 | 359 | 2019 |
| RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K‐12 H Salgado, S Gama‐Castro, A Martínez‐Antonio, E Díaz‐Peredo, ... Nucleic Acids Research 32 (suppl_1), D303-D306, 2004 | 350 | 2004 |
| RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 H Salgado, A Santos-Zavaleta, S Gama-Castro, D Millán-Zárate, ... Nucleic acids research 29 (1), 72-74, 2001 | 311 | 2001 |
| Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli A Mendoza-Vargas, L Olvera, M Olvera, R Grande, L Vega-Alvarado, ... PloS one 4 (10), e7526, 2009 | 304 | 2009 |
| RegulonDB: A database on transcriptional regulation in Escherichia coli AM Huerta, H Salgado, D Thieffry, J Collado-Vides Nucleic acids research 26 (1), 55-59, 1998 | 251 | 1998 |
| The mosaic structure of the symbiotic plasmid of Rhizobium etliCFN42 and its relation to other symbiotic genome compartments V González, P Bustos, MA Ramírez-Romero, A Medrano-Soto, H Salgado, ... Genome biology 4, 1-13, 2003 | 188 | 2003 |
| Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12. D Thieffry, H Salgado, AM Huerta, J Collado-Vides Bioinformatics (Oxford, England) 14 (5), 391-400, 1998 | 116 | 1998 |
| The LysR-Type Transcriptional Regulator LeuO Controls Expression of Several Genes in Salmonella enterica Serovar Typhi I Hernández-Lucas, AL Gallego-Hernández, S Encarnación, ... Journal of bacteriology 190 (5), 1658-1670, 2008 | 96 | 2008 |
| RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 H Salgado, A Santos-Zavaleta, S Gama-Castro, D Millán-Zárate, ... Nucleic Acids Research 28 (1), 65-67, 2000 | 89 | 2000 |
| The comprehensive updated regulatory network of Escherichia coli K-12 H Salgado, A Santos-Zavaleta, S Gama-Castro, M Peralta-Gil, ... BMC bioinformatics 7 (1), 1-5, 2006 | 83 | 2006 |
| Transcriptional regulation shapes the organization of genes on bacterial chromosomes SC Janga, H Salgado, A Martínez-Antonio Nucleic acids research 37 (11), 3680-3688, 2009 | 75 | 2009 |
| RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli H Salgado, A Santos, U Garza-Ramos, J van Helden, E Díaz, ... Nucleic acids research 27 (1), 59-60, 1999 | 66 | 1999 |
| RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... Microbial Genomics 8 (5), 000833, 2022 | 62 | 2022 |
| Automatic reconstruction of a bacterial regulatory network using Natural Language Processing C Rodríguez-Penagos, H Salgado, I Martínez-Flores, J Collado-Vides BMC bioinformatics 8 (1), 1-11, 2007 | 61 | 2007 |
Julio Collado-VidesProfessor of Computational Genomics, CCG, UNAMGeverifieerd e-mailadres voor ccg.unam.mx
