Thomas A. Peterson, PhD
Thomas A. Peterson, PhD
Director, UCSF REACH Analytics Core; Asst. Adj. Professor, BCHSI & Dept. of Orthopaedic Surgery
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Crosstalk between the circadian clock and innate immunity in Arabidopsis
C Zhang, Q Xie, RG Anderson, G Ng, NC Seitz, T Peterson, CR McClung, ...
PLoS pathogens 9 (6), e1003370, 2013
Towards precision medicine: advances in computational approaches for the analysis of human variants
TA Peterson, E Doughty, MG Kann
Journal of molecular biology 425 (21), 4047-4063, 2013
Toward an automatic method for extracting cancer-and other disease-related point mutations from the biomedical literature
E Doughty, A Kertesz-Farkas, O Bodenreider, G Thompson, A Adadey, ...
Bioinformatics 27 (3), 408-415, 2011
DMDM: domain mapping of disease mutations
TA Peterson, A Adadey, I Santana-Cruz, Y Sun, A Winder, MG Kann
Bioinformatics 26 (19), 2458-2459, 2010
Domain landscapes of somatic mutations in cancer
NL Nehrt, TA Peterson, DH Park, MG Kann
BMC genomics 13, 1-13, 2012
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes
B Norgeot, K Muenzen, TA Peterson, X Fan, BS Glicksberg, G Schenk, ...
NPJ digital medicine 3 (1), 57, 2020
Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples
TA Peterson, IIM Gauran, J Park, DH Park, MG Kann
PLOS Computational Biology 13 (4), e1005428, 2017
Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer
TA Peterson, NL Nehrt, DH Park, MG Kann
Journal of the American Medical Informatics Association 19 (2), 275-283, 2012
A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations
TA Peterson, DH Park, MG Kann
BMC genomics 14 (3), 1-16, 2013
Regulatory Single‐Nucleotide Variant Predictor Increases Predictive Performance of Functional Regulatory Variants
TA Peterson, M Mort, DN Cooper, P Radivojac, MG Kann, SD Mooney
Human Mutation 37 (11), 1137-1143, 2016
Empirical null estimation using zero‐inflated discrete mixture distributions and its application to protein domain data
IIM Gauran, J Park, J Lim, DH Park, J Zylstra, T Peterson, M Kann, ...
Biometrics 74 (2), 458-471, 2018
Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey
SM Nam, TA Peterson, AJ Butte, KY Seo, HW Han
JMIR Medical Informatics 8 (2), e16153, 2020
Automatic extraction of social determinants of health from medical notes of chronic lower back pain patients
DS Lituiev, B Lacar, S Pak, PL Abramowitsch, EH De Marchis, ...
Journal of the American Medical Informatics Association 30 (8), 1438-1447, 2023
Discovery of Depression-Associated Factors From a Nationwide Population-Based Survey: Epidemiological Study Using Machine Learning and Network Analysis
SM Nam, TA Peterson, KY Seo, HW Han, JI Kang
Journal of Medical Internet Research 23 (6), e27344, 2021
Predictive Models for Length of Stay and Discharge Disposition in Elective Spine Surgery: Development, Validation, and Comparison to the ACS NSQIP Risk Calculator
A Arora, D Lituiev, D Jain, D Hadley, AJ Butte, S Berven, TA Peterson
Spine 48 (1), E1-E13, 2023
Quantifying Variation in Treatment Utilization for Type 2 Diabetes Across Five Major University of California Health Systems
TA Peterson, V Fontil, SK Koliwad, A Patel, AJ Butte
Diabetes Care 44 (4), 908-914, 2021
Analyzing excipient-related adverse events in antiseizure drug formulations
Y Ionova, T Peterson, L Wilson
Epilepsy Research 184, 106947, 2022
Risk factors for extended length of stay and non-home discharge in adults treated with multi-level fusion for lumbar degenerative pathology and deformity
A Arora, A Wague, R Srinivas, M Callahan, TA Peterson, AA Theologis, ...
Spine Deformity 11 (3), 685-697, 2023
Domain landscapes of somatic mutations in cancer.
TA Peterson, DH Park, MG Kann
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits …, 2013
Unsupervised Machine Learning on Motion Capture Data Uncovers Movement Strategies in Low Back Pain
AV Keller, A Torres-Espin, TA Peterson, J Booker, C O’Neill, JC Lotz, ...
Frontiers in Bioengineering and Biotechnology 10, 868684, 2022
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