| Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014 | 2244 | 2014 |
| A general species delimitation method with applications to phylogenetic placements J Zhang, P Kapli, P Pavlidis, A Stamatakis Bioinformatics 29 (22), 2869-2876, 2013 | 2189 | 2013 |
| Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017 | 639 | 2017 |
| Phylogenetic tree building in the genomic age P Kapli, Z Yang, MJ Telford Nature Reviews Genetics 21 (7), 428-444, 2020 | 221 | 2020 |
| Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects B Wipfler, H Letsch, PB Frandsen, P Kapli, C Mayer, D Bartel, TR Buckley, ... Proceedings of the National Academy of Sciences 116 (8), 3024-3029, 2019 | 131 | 2019 |
| A review of phylogeographic analyses of animal taxa from the Aegean and surrounding regions N Poulakakis, P Kapli, P Lymberakis, A Trichas, K Vardinoyiannis, ... Journal of Zoological Systematics and Evolutionary Research 53 (1), 18-32, 2015 | 108 | 2015 |
| Topology-dependent asymmetry in systematic errors affects phylogenetic placement of Ctenophora and Xenacoelomorpha P Kapli, MJ Telford Science advances 6 (50), eabc5162, 2020 | 86 | 2020 |
| Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution" KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ... Science 349 (6247), 487, 2015 | 81 | 2015 |
| Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae) P Kapli, D Botoni, Ç Ilgaz, Y Kumlutaş, A Avcı, N Rastegar-Pouyani, ... Molecular Phylogenetics and Evolution 66 (3), 992-1001, 2013 | 80 | 2013 |
| An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola) A Vasilikopoulos, B Misof, K Meusemann, D Lieberz, T Flouri, RG Beutel, ... BMC Evolutionary Biology 20 (1), 1-24, 2020 | 66 | 2020 |
| Using more than the oldest fossils: dating Osmundaceae with three Bayesian clock approaches GW Grimm, P Kapli, B Bomfleur, S McLoughlin, SS Renner Systematic Biology 64 (3), 396-405, 2015 | 60 | 2015 |
| Comparative phylogeography of six herpetofauna species in Cyprus: late Miocene to Pleistocene colonization routes N Poulakakis, P Kapli, A Kardamaki, E Skourtanioti, B Göcmen, Ç Ilgaz, ... Biological Journal of the Linnean Society 108 (3), 619-635, 2013 | 54 | 2013 |
| Molecular phylogeny of three Mesalina (Reptilia: Lacertidae) species (M. guttulata, M. brevirostris and M. bahaeldini) from North Africa and the Middle East: Another case of … P Kapli, P Lymberakis, N Poulakakis, G Mantziou, A Parmakelis, ... Molecular phylogenetics and evolution 49 (1), 102-110, 2008 | 51 | 2008 |
| Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth–death clock model SS Renner, GW Grimm, P Kapli, T Denk Philosophical Transactions of the Royal Society B: Biological Sciences 371 …, 2016 | 49 | 2016 |
| Lack of support for Deuterostomia prompts reinterpretation of the first Bilateria P Kapli, P Natsidis, DJ Leite, M Fursman, N Jeffrie, IA Rahman, H Philippe, ... Science advances 7 (12), eabe2741, 2021 | 48 | 2021 |
| Separate histories in both sides of the Mediterranean: phylogeny and niche evolution of ocellated lizards F Ahmadzadeh, M Flecks, MA Carretero, W Böhme, F Ihlow, P Kapli, ... Journal of Biogeography 43 (6), 1242-1253, 2016 | 45 | 2016 |
| A reinvestigation of phylogeny and divergence times of the Ablepharus kitaibelii species complex (Sauria, Scincidae) based on mtDNA and nuDNA genes E Skourtanioti, P Kapli, Ç Ilgaz, Y Kumlutaş, A Avcı, F Ahmadzadeh, ... Molecular Phylogenetics and Evolution 103, 199-214, 2016 | 44 | 2016 |
| Historical biogeography of the lacertid lizard Mesalina in North Africa and the Middle East P Kapli, P Lymberakis, PA Crochet, P Geniez, JC Brito, M Almutairi, ... Journal of Biogeography 42 (2), 267-279, 2015 | 37 | 2015 |
| A re-analysis of the molecular phylogeny of Lacertidae with currently available data P Kapli, N Poulakakis, P Lymberakis, M Mylonas Basic and Applied Herpetology 25, 97-104, 2011 | 32 | 2011 |
| Systematic errors in phylogenetic trees P Kapli, T Flouri, MJ Telford Current Biology 31 (2), R59-R64, 2021 | 26 | 2021 |
