| Alevin efficiently estimates accurate gene abundances from dscRNA-seq data A Srivastava, L Malik, T Smith, I Sudbery, R Patro Genome biology 20, 1-16, 2019 | 164 | 2019 |
| Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21 (1), 1-29, 2020 | 109 | 2020 |
| Rich chromatin structure prediction from Hi-C data L Malik, R Patro Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 26 | 2017 |
| Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification H Sarkar, M Zakeri, L Malik, R Patro Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 22 | 2018 |
| Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis L Malik, F Almodaresi, R Patro Bioinformatics 34 (19), 3265-3272, 2018 | 13 | 2018 |
| RTA occupancy of the origin of lytic replication during murine gammaherpesvirus 68 reactivation from B cell latency AL Santana, DG Oldenburg, V Kirillov, L Malik, Q Dong, R Sinayev, ... Pathogens 6 (1), 9, 2017 | 11 | 2017 |
| Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes A Srivastava, H Sarkar, L Malik, R Patro arXiv preprint arXiv:1604.03250, 2016 | 10 | 2016 |
| Combinatorial loss of the enzymatic activities of viral uracil-DNA glycosylase and viral dUTPase impairs murine gammaherpesvirus pathogenesis and leads to increased … Q Dong, KR Smith, DG Oldenburg, M Shapiro, WR Schutt, L Malik, ... MBio 9 (5), 10.1128/mbio. 01831-18, 2018 | 8 | 2018 |
| A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification A Srivastava, L Malik, H Sarkar, R Patro Bioinformatics 36 (Supplement_1), i292-i299, 2020 | 7 | 2020 |
| Algorithms for Improving Quantification Accuracy in Reference Based and de novo Transcriptomics LI Malik State University of New York at Stony Brook, 2020 | | 2020 |
| Combinatorial Loss of the Enzymatic Activities of Viral Uracil-DNA Glycosylase and Viral dUTPase Impairs Murine Gammaherpesvirus Pathogenesis and Leads to Increased … Q Dong, KR Smith, DG Oldenburg, M Shapiro, WR Schutt, L Malik, ... American Society for Microbiology, 2018 | | 2018 |
| Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics H Sarkar, M Zakeri, L Malik, R Patro, ... | | 2018 |
| Towards Selective-Alignment: Producing Accurate And Sensitive Alignments Using Quasi-Mapping H Sarkar, M Zakeri, L Malik, R Patro bioRxiv, 138800, 2017 | | 2017 |
| Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes LI Malik, S Thatipally, N Junneti, R Patro bioRxiv, 089417, 2016 | | 2016 |
Rob PatroAssociate Professor, Department of Computer Science, University of MarylandVerified email at cs.umd.edu
