Ken Chen
Ken Chen
Associate Professor of Bioinformatics and Computational Biology, The University of Texas MD Anderson
Verified email at mdanderson.org - Homepage
Title
Cited by
Cited by
Year
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061-1073, 2010
72652010
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Cancer Genome Atlas Research Network
Nature 455 (7216), 1061, 2008
54022008
Somatic mutations affect key pathways in lung adenocarcinoma
L Ding, G Getz, DA Wheeler, ER Mardis, MD McLellan, K Cibulskis, ...
Nature 455 (7216), 1069-1075, 2008
25892008
Recurring mutations found by sequencing an acute myeloid leukemia genome
ER Mardis, L Ding, DJ Dooling, DE Larson, MD McLellan, K Chen, ...
New England Journal of Medicine 361 (11), 1058-1066, 2009
22022009
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
L Ding, TJ Ley, DE Larson, CA Miller, DC Koboldt, JS Welch, JK Ritchey, ...
Nature 481 (7382), 506-510, 2012
19232012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
13792015
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
TJ Ley, ER Mardis, L Ding, B Fulton, MD McLellan, K Chen, D Dooling, ...
Nature 456 (7218), 66-72, 2008
13422008
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
K Chen, JW Wallis, MD McLellan, DE Larson, JM Kalicki, CS Pohl, ...
Nature methods 6 (9), 677-681, 2009
13172009
The origin and evolution of mutations in acute myeloid leukemia
JS Welch, TJ Ley, DC Link, CA Miller, DE Larson, DC Koboldt, ...
Cell 150 (2), 264-278, 2012
13132012
Genome remodelling in a basal-like breast cancer metastasis and xenograft
LI Ding, MJ Ellis, S Li, DE Larson, K Chen, JW Wallis, CC Harris, ...
Nature 464 (7291), 999-1005, 2010
11882010
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
10832018
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
DC Koboldt, K Chen, T Wylie, DE Larson, MD McLellan, ER Mardis, ...
Bioinformatics 25 (17), 2283-2285, 2009
10792009
Mapping copy number variation by population-scale genome sequencing
RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ...
Nature 470 (7332), 59-65, 2011
10562011
Genomic landscape of non-small cell lung cancer in smokers and never-smokers
R Govindan, L Ding, M Griffith, J Subramanian, ND Dees, KL Kanchi, ...
Cell 150 (6), 1121-1134, 2012
10082012
Whole-genome analysis informs breast cancer response to aromatase inhibition
MJ Ellis, L Ding, D Shen, J Luo, VJ Suman, JW Wallis, BA Van Tine, ...
Nature 486 (7403), 353-360, 2012
9662012
Clonal evolution in breast cancer revealed by single nucleus genome sequencing
Y Wang, J Waters, ML Leung, A Unruh, W Roh, X Shi, K Chen, P Scheet, ...
Nature 512 (7513), 155-160, 2014
8242014
Clonal architecture of secondary acute myeloid leukemia
MJ Walter, D Shen, L Ding, J Shao, DC Koboldt, K Chen, DE Larson, ...
New England Journal of Medicine 366 (12), 1090-1098, 2012
7732012
SomaticSniper: identification of somatic point mutations in whole genome sequencing data
DE Larson, CC Harris, K Chen, DC Koboldt, TE Abbott, DJ Dooling, ...
Bioinformatics 28 (3), 311-317, 2012
4892012
CREST maps somatic structural variation in cancer genomes with base-pair resolution
J Wang, CG Mullighan, J Easton, S Roberts, SL Heatley, J Ma, MC Rusch, ...
Nature methods 8 (8), 652-654, 2011
4602011
Use of whole-genome sequencing to diagnose a cryptic fusion oncogene
JS Welch, P Westervelt, L Ding, DE Larson, JM Klco, S Kulkarni, J Wallis, ...
Jama 305 (15), 1577-1584, 2011
2582011
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