| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 5977 | 2012 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 1500 | 2012 |
| Metabolic reconstruction for metagenomic data and its application to the human microbiome S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ... PLoS Comput Biol 8 (6), e1002358, 2012 | 834 | 2012 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 608 | 2010 |
| Patterns and implications of gene gain and loss in the evolution of Prochlorococcus GC Kettler, AC Martiny, K Huang, J Zucker, ML Coleman, S Rodrigue, ... PLoS Genet 3 (12), e231, 2007 | 489 | 2007 |
| Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production C Colijn, A Brandes, J Zucker, DS Lun, B Weiner, MR Farhat, TY Cheng, ... PLoS Comput Biol 5 (8), e1000489, 2009 | 361 | 2009 |
| The Mycobacterium tuberculosis regulatory network and hypoxia JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ... Nature 499 (7457), 178-183, 2013 | 341 | 2013 |
| Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus KL Palmer, P Godfrey, A Griggs, VN Kos, J Zucker, C Desjardins, ... MBio 3 (1), 2012 | 205 | 2012 |
| Genomics of Loa loa, a Wolbachia-free filarial parasite of humans CA Desjardins, GC Cerqueira, JM Goldberg, JCD Hotopp, BJ Haas, ... Nature genetics 45 (5), 495-500, 2013 | 154 | 2013 |
| Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis CA Desjardins, MD Champion, JW Holder, A Muszewska, J Goldberg, ... PLoS Genet 7 (10), e1002345, 2011 | 154 | 2011 |
| TB database 2010: overview and update JE Galagan, P Sisk, C Stolte, B Weiner, M Koehrsen, F Wymore, ... Tuberculosis 90 (4), 225-235, 2010 | 122 | 2010 |
| A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola GH Thomas, J Zucker, SJ Macdonald, A Sorokin, I Goryanin, AE Douglas BMC systems biology 3 (1), 24, 2009 | 114 | 2009 |
| Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ... PLoS Genet 7 (9), e1002219, 2011 | 110 | 2011 |
| From annotated genomes to metabolic flux models and kinetic parameter fitting D Segrè, J Zucker, J Katz, X Lin, P D'Haeseleer, WP Rindone, ... OMICS A Journal of Integrative Biology 7 (3), 301-316, 2003 | 89 | 2003 |
| Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ... BMC genomics 13 (1), 120, 2012 | 72 | 2012 |
| Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARM JM Dreyfuss, JD Zucker, HM Hood, LR Ocasio, MS Sachs, JE Galagan PLoS Comput Biol 9 (7), e1003126, 2013 | 60 | 2013 |
| Microbial community metabolic modeling: a community data‐driven network reconstruction CS Henry, HC Bernstein, P Weisenhorn, RC Taylor, JY Lee, J Zucker, ... Journal of cellular physiology 231 (11), 2339-2345, 2016 | 57 | 2016 |
| Genome-wide characterization of light-regulated genes in Neurospora crassa C Wu, F Yang, KM Smith, M Peterson, R Dekhang, Y Zhang, J Zucker, ... G3: Genes, Genomes, Genetics 4 (9), 1731-1745, 2014 | 53 | 2014 |
| Summary of the DREAM8 parameter estimation challenge: toward parameter identification for whole-cell models JR Karr, AH Williams, JD Zucker, A Raue, B Steiert, J Timmer, C Kreutz, ... PLoS Comput Biol 11 (5), e1004096, 2015 | 36 | 2015 |
| Moleculo long-read sequencing facilitates assembly and genomic binning from complex soil metagenomes RA White, EM Bottos, TR Chowdhury, JD Zucker, CJ Brislawn, CD Nicora, ... MSystems 1 (3), 2016 | 34 | 2016 |
James GalaganAssociate Professor, Boston UniversityVerified email at bu.edu
