Stefano de Pretis
Stefano de Pretis
San Raffaele Hospital, Center for Omics Sciences, Milan, Italy
Verified email at
Cited by
Cited by
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis
A Sabo, TR Kress, M Pelizzola, S De Pretis, MM Gorski, A Tesi, MJ Morelli, ...
Nature 511 (7510), 488-492, 2014
Degradation dynamics of microRNAs revealed by a novel pulse-chase approach
MJ Marzi, F Ghini, B Cerruti, S De Pretis, P Bonetti, C Giacomelli, ...
Genome research 26 (4), 554-565, 2016
Integrative classification of human coding and noncoding genes through RNA metabolism profiles
N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler
Nature structural & molecular biology 24 (1), 86-96, 2017
methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
K Kishore, S de Pretis, R Lister, MJ Morelli, V Bianchi, B Amati, JR Ecker, ...
BMC bioinformatics 16 (1), 1-11, 2015
Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination
LMI Austenaa, I Barozzi, M Simonatto, S Masella, G Della Chiara, ...
Molecular cell 60 (3), 460-474, 2015
INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA-and 4sU-seq time course experiments
S De Pretis, T Kress, MJ Morelli, GEM Melloni, L Riva, B Amati, ...
Bioinformatics 31 (17), 2829-2835, 2015
Integrated systems for NGS data management and analysis: open issues and available solutions
V Bianchi, A Ceol, AGE Ogier, S De Pretis, E Galeota, K Kishore, P Bora, ...
Frontiers in genetics 7, 75, 2016
Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation
S De Pretis, TR Kress, MJ Morelli, A Sabò, C Locarno, A Verrecchia, ...
Genome research 27 (10), 1658-1664, 2017
DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes
GEM Melloni, AGE Ogier, S de Pretis, L Mazzarella, M Pelizzola, ...
Genome medicine 6 (6), 1-13, 2014
An early Myc‐dependent transcriptional program orchestrates cell growth during B‐cell activation
A Tesi, S de Pretis, M Furlan, M Filipuzzi, MJ Morelli, A Andronache, ...
EMBO reports 20 (9), e47987, 2019
m6A-dependent RNA dynamics in T cell differentiation
M Furlan, E Galeota, S De Pretis, M Caselle, M Pelizzola
Genes 10 (1), 28, 2019
LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer
GEM Melloni, S de Pretis, L Riva, M Pelizzola, A Céol, J Costanza, ...
BMC bioinformatics 17 (1), 1-12, 2016
Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling
M Furlan, E Galeota, N Del Gaudio, E Dassi, M Caselle, S de Pretis, ...
Genome research 30 (10), 1492-1507, 2020
Computational and experimental methods to decipher the epigenetic code
S de Pretis, M Pelizzola
Frontiers in genetics 5, 335, 2014
Direct RNA sequencing for the study of synthesis, processing, and degradation of modified transcripts
M Furlan, I Tanaka, T Leonardi, S de Pretis, M Pelizzola
Frontiers in Genetics 11, 394, 2020
Translation is required for miRNA‐dependent decay of endogenous transcripts
A Biasini, B Abdulkarim, S de Pretis, JY Tan, R Arora, H Wischnewski, ...
The EMBO journal 40 (3), e104569, 2021
Dynamics of transcriptional and post-transcriptional regulation
M Furlan, S de Pretis, M Pelizzola
Briefings in Bioinformatics 22 (4), bbaa389, 2021
INSPEcT-GUI reveals the impact of the kinetic rates of RNA synthesis, processing, and degradation, on premature and mature RNA species
S De Pretis, M Furlan, M Pelizzola
Frontiers in Genetics 11, 2020
Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data
M Pelizzola, MJ Morelli, A Sabò, TR Kress, S de Pretis, B Amati
Data in brief 3, 40-46, 2015
Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma
S de Pretis, M Furlan, M Pelizzola
RNA Bioinformatics, 271-287, 2021
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