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Thomas Rattei
Thomas Rattei
Professor for Computational Biology, University of Vienna
Geverifieerd e-mailadres voor univie.ac.at
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ...
Nucleic acids research 47 (D1), D309-D314, 2019
28552019
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504-509, 2015
22832015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
19392016
Genome sequencing and analysis of the model grass Brachypodium distachyon
DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ...
Nature 463 (7282), 763-768, 2010
19022010
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
15382017
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790-794, 2006
13782006
The dynamic genome of Hydra
JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ...
Nature 464 (7288), 592-596, 2010
8692010
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
S Lücker, M Wagner, F Maixner, E Pelletier, H Koch, B Vacherie, T Rattei, ...
Proceedings of the National Academy of Sciences 107 (30), 13479-13484, 2010
7842010
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
J Krumsiek, R Arnold, T Rattei
Bioinformatics 23 (8), 1026-1028, 2007
7732007
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7422017
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2012
6222012
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
5952014
amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
M Pester, T Rattei, S Flechl, A Gröngröft, A Richter, J Overmann, ...
Environmental Microbiology 14 (2), 525-539, 2012
5732012
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
A Spang, R Hatzenpichler, C Brochier-Armanet, T Rattei, P Tischler, ...
Trends in microbiology 18 (8), 331-340, 2010
5582010
Illuminating the evolutionary history of chlamydiae
M Horn, A Collingro, S Schmitz-Esser, CL Beier, U Purkhold, B Fartmann, ...
Science 304 (5671), 728-730, 2004
5222004
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
NS Webster, MW Taylor, F Behnam, S Lücker, T Rattei, S Whalan, M Horn, ...
Environmental Microbiology 12 (8), 2070-2082, 2010
4882010
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
4662019
MIPS: analysis and annotation of proteins from whole genomes in 2005
HW Mewes, D Frishman, KFX Mayer, M Münsterkötter, O Noubibou, ...
Nucleic acids research 34 (suppl_1), D169-D172, 2006
4332006
NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira
M Pester, F Maixner, D Berry, T Rattei, H Koch, S Lücker, B Nowka, ...
Environmental microbiology 16 (10), 3055-3071, 2014
3552014
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases
AL Müller, KU Kjeldsen, T Rattei, M Pester, A Loy
The ISME journal 9 (5), 1152-1165, 2015
3502015
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Artikelen 1–20