Avinash Kumar Shanmugam
Title
Cited by
Cited by
Year
Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA
MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ...
Annals of Oncology 31 (6), 745-759, 2020
1442020
Fast parallel tandem mass spectral library searching using GPU hardware acceleration
LA Baumgardner, AK Shanmugam, H Lam, JK Eng, DB Martin
Journal of proteome research 10 (6), 2882-2888, 2011
542011
MLL1 inhibition reprograms epiblast stem cells to naive pluripotency
H Zhang, S Gayen, J Xiong, B Zhou, AK Shanmugam, Y Sun, H Karatas, ...
Cell stem cell 18 (4), 481-494, 2016
522016
Utility of RNA-seq and GPMDB protein observation frequency for improving the sensitivity of protein identification by tandem MS
AK Shanmugam, AK Yocum, AI Nesvizhskii
Journal of proteome research 13 (9), 4113-4119, 2014
242014
Effective leveraging of targeted search spaces for improving peptide identification in tandem mass spectrometry based proteomics
AK Shanmugam, AI Nesvizhskii
Journal of proteome research 14 (12), 5169-5178, 2015
222015
Highlights from the third european international society for computational biology (ISCB) student council symposium 2014
M Francescatto, SMA Hermans, S Babaei, E Vicedo, A Borrel, P Meysman
BMC bioinformatics 16 (3), 1-4, 2015
20*2015
Highlights from the third european international society for computational biology (ISCB) student council symposium 2014
M Francescatto, SMA Hermans, S Babaei, E Vicedo, A Borrel, P Meysman
BMC bioinformatics 16 (3), 1-4, 2015
20*2015
Philosopher: a versatile toolkit for shotgun proteomics data analysis
F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ...
Nature methods 17 (9), 869-870, 2020
162020
Ten simple rules for starting a regional student group
AK Shanmugam, G Macintyre, M Michaut, T Abeel
PLoS Comput Biol 9 (11), e1003340, 2013
82013
Highlights from the ISCB Student Council Symposium 2013
T Di Domenico, C Prudence, E Vicedo, E Guney, A Jigisha, ...
BMC bioinformatics 15 (3), 1-4, 2014
52014
Aneuploidy and recombination in the human preimplantation embryo. Copy number variation analysis and genome-wide polymorphism genotyping
M Konstantinidis, K Ravichandran, Z Gunes, R Prates, NN Goodall, ...
Reproductive biomedicine online 40 (4), 479-493, 2020
32020
Establishing and managing a global student network
A Shanmugam, G Macintyre
PLoS Comput Biol 10 (10), e1003920, 2014
32014
The ISCB student council internship program: Expanding computational biology capacity worldwide
J Anupama, M Francescatto, F Rahman, N Fatima, D DeBlasio, ...
PLoS computational biology 14 (1), e1005802, 2018
22018
Highlights from the 1st ISCB latin american student council symposium 2014
R Gonzalo Parra, FL Simonetti, MA Hasenahuer, GJ Olguin-Orellana, ...
BMC BIOINFORMATICS 16, 2015
12015
Internships initiative of the ISCB Student Council
N Chelbat, AK Shanmugam, VP Satagopam
EMBnet. journal 16 (1), 3, 2010
12010
Reporting of Mosaics as High-level and Low level mosaics makes more number of embryos available as alternatives for transfer when no euploid embryos are available
S Sawarkar, A Shanmugam, L Ribustello, P Colls, M Large, S Munne, ...
Reproductive BioMedicine Online 38, e16-e17, 2019
2019
Variant detection by NGS from embryo biopsies
SS Sawarkar, A Shanmugam, P Patrizio, SB Munne
Fertility and Sterility 110 (4), e418, 2018
2018
Expanded carrier screening reveals insights into enrichment of specific disorders within a reproductive genomic space
L Hurd, U Schick, J Hayes, J Olberding, A Shanmugam, A Manoharan, ...
Fertility and Sterility 108 (3), e263, 2017
2017
Integrative Analysis Frameworks for Improved Peptide and Protein Identifications from Tandem Mass Spectrometry Data.
AK Shanmugam
2015
Highlights from the 1st ISCB Latin American Student Council Symposium 2014
GJ Olguin Orellana, RG Parra, FL Simonetti, MA Hasenahuer, ...
2014
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Articles 1–20