Pascal Hingamp

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	All	Since 2016
Citations	11063	5677
h-index	37	27
i10-index	52	35

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Co-authors

Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
Helen ParkinsonEuropean Bioinformatics Institute - Head of Molecular Archives, Team LeaderVerified email at ebi.ac.uk
John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Paul SpellmanOregon Health and Sciences UniversityVerified email at ohsu.edu
Christian StoeckertReseach Professor of Genetics, University of PennsylvaniaVerified email at upenn.edu
Gavin SherlockProfessor of Genetics, Stanford UniversityVerified email at stanford.edu
Hiroyuki OgataInstitute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Shinichi SunagawaETH Zürich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Peer BorkEMBLVerified email at embl.de
Ugis SarkansTechnical team leader, EMBL-EBIVerified email at ebi.ac.uk
Jaak ViloProf. of Bioinformatics, Institute of Computer Science, University of Tartu, EstoniaVerified email at ut.ee
Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Jeroen RaesProfessor, Faculty of Medicine, Rega Institute, KU Leuven; Group Leader Microbiome, VIB, BelgiumVerified email at med.kuleuven.be
Karsenti EricSenior scientist EMBLVerified email at embl.de
Gipsi Lima MendezSenior Computational Biologist, UCLouvain, BelgiumVerified email at uclouvain.be
Olivier JaillonCEA - INSTITUT JACOB - GENOSCOPEVerified email at genoscope.cns.fr
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
Guillem SalazarInstitute of Microbiology - ETH ZurichVerified email at ethz.ch
Fabrice NotStation Biologique de Roscoff - CNRSVerified email at sb-roscoff.fr
Susanna-Assunta SansoneUniversity of Oxford, Oxford e-Research Centre (Associate Director, Associate Professor)Verified email at oerc.ox.ac.uk

Pascal Hingamp

Associate Professor, Aix Marseille University, France

Verified email at univ-amu.fr - Homepage

bioinformatics metagenomics marine plankton ecology virology


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Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001	4501	2001
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 2015	1183	2015
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 2015	985	2015
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 2015	424	2015
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	354	2016
A holistic approach to marine eco-systems biology E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ... PLoS biol 9 (10), e1001177, 2011	325	2011
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ... Environmental microbiology 16 (9), 2659-2671, 2014	243	2014
Open science resources for the discovery and analysis of Tara Oceans data S Pesant, F Not, M Picheral, S Kandels-Lewis, N Le Bescot, G Gorsky, ... Scientific data 2 (1), 1-16, 2015	197	2015
Standards for microarray data CA Ball, G Sherlock, H Parkinson, P Rocca-Sera, C Brooksbank, ... Science 298 (5593), 539b-539b, 2002	197	2002
The EMBL nucleotide sequence database W Baker, A van den Broek, E Camon, P Hingamp, P Sterk, G Stoesser, ... Nucleic Acids Research 28 (1), 19-23, 2000	176	2000
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ... The ISME journal 7 (9), 1678-1695, 2013	152	2013
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	147	2019
Submission of microarray data to public repositories CA Ball, A Brazma, H Causton, S Chervitz, R Edgar, P Hingamp, ... PLoS Biol 2 (9), e317, 2004	147	2004
A global ocean atlas of eukaryotic genes Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ... Nature communications 9 (1), 1-13, 2018	133	2018
QDD version 3.1: A user‐friendly computer program for microsatellite selection and primer design revisited: Experimental validation of variables determining genotyping success rate E Meglécz, N Pech, A Gilles, V Dubut, P Hingamp, A Trilles, R Grenier, ... Molecular Ecology Resources 14 (6), 1302-1313, 2014	126	2014
mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus M Legendre, S Audic, O Poirot, P Hingamp, V Seltzer, D Byrne, A Lartigue, ... Genome research 20 (5), 664-674, 2010	122	2010
Linking virus genomes with host taxonomy T Mihara, Y Nishimura, Y Shimizu, H Nishiyama, G Yoshikawa, H Uehara, ... Viruses 8 (3), 66, 2016	117	2016
Environmental characteristics of Agulhas rings affect interocean plankton transport E Villar, GK Farrant, M Follows, L Garczarek, S Speich, S Audic, L Bittner, ... Science 348 (6237), 2015	112	2015
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	101	2019
Breast cancer revisited using DNA array‐based gene expression profiling F Bertucci, P Viens, P Hingamp, V Nasser, R Houlgatte, D Birnbaum International journal of cancer 103 (5), 565-571, 2003	73	2003

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