Nikolaos Alachiotis

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Alexandros StamatakisFoundation for Research and Technology - Hellas, HITS gGmbH, KITVerified email at ics.forth.gr
Pavlos PavlidisFoundation of Research and Technology - Hellas (ICS)Verified email at ics.forth.gr
Simon A BergerHeidelberg Institute for Theoretical Studies (HITS gGmbH)Verified email at h-its.org
Dionisios PnevmatikatosProfessor of ECE, National Technical University of AthensVerified email at cslab.ece.ntua.gr
Dimitris TheodoropoulosAffiliated post-doc researcher, Institute of Communication and Computation Systems, NationalVerified email at tuc.gr
Tze Meng LowCarnegie Mellon UniversityVerified email at andrew.cmu.edu
Apostolos DollasProfessor of ECE, Technical University of Crete, Research Associate, ICS-FORTHVerified email at isc.tuc.gr
Berkin AkinGoogleVerified email at google.com
Kassa Semagn FentayeUniversity of AlbertaVerified email at ualberta.ca
Dimitris SyrivelisSenior Engineer at NvidiaVerified email at nvidia.com
Andrea Reale, Ph.D.Amazon Web ServicesVerified email at amazon.com
James C. HoeProfessor of Electrical and Computer Engineering, Carnegie Mellon UniversityVerified email at cmu.edu
Lawrence PileggiCoraluppi Head and Tanoto Professor of ECE, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Franz FranchettiCarnegie Mellon UniversityVerified email at ece.cmu.edu
Euripides SotiriadesTechnical University of CreteVerified email at mhl.tuc.gr
Ilias SyrigosPh.D Candidate, University of Thessaly, GreeceVerified email at uth.gr
Georgios ZervasProfessor of Optical Networked Systems & EPSRC Fellow at UCLVerified email at ucl.ac.uk
Ferad ZyulkyarovBarcelona Supercomputing CenterVerified email at bsc.es
Martí TorrentsBarcelona Supercomputing CenterVerified email at bsc.es
Kostas KatrinisSoftware Engineer @ FacebookVerified email at fb.com

Nikolaos Alachiotis

University of Twente

Verified email at utwente.nl

High Performance Computing FPGAs GPUs Bioinformatics


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SweeD: Likelihood-based detection of selective sweeps in thousands of genomes P Pavlidis, D Živković, A Stamatakis, N Alachiotis Molecular Biology and Evolution, 2013	443	2013
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data A Stamatakis, N Alachiotis Bioinformatics 26 (12), i132-i139, 2010	155	2010
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets N Alachiotis, A Stamatakis, P Pavlidis Bioinformatics 28 (17), 2274-2275, 2012	151	2012
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors N Alachiotis, P Pavlidis Communications Biology 1 (1), 79, 2018	138	2018
A survey of methods and tools to detect recent and strong positive selection P Pavlidis, N Alachiotis Journal of Biological Research-Thessaloniki 24 (1), 7, 2017	134	2017
3D-Stacked Memory-Side Acceleration: Accelerator and System Design Q Guo, N Alachiotis, B Akin, F Sadi, G Xu, TM Low, L Pileggi, JC Hoe, ... 2nd Workshop on Near Data Processing (WONDP) in conjunction with the 47th …, 2014	132*	2014
Efficient PC-FPGA Communication over Gigabit Ethernet N Alachiotis, SA Berger, A Stamatakis Computer and Information Technology (CIT), 2010 IEEE 10th International …, 2010	111	2010
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ... Molecular Biology and Evolution 34 (10), 2704-2715, 2017	73	2017
Exploring FPGAs for accelerating the phylogenetic likelihood function N Alachiotis, E Sotiriades, A Dollas, A Stamatakis 2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009	61	2009
dReDBox: Materializing a full-stack rack-scale system prototype of a next-generation disaggregated datacenter M Bielski, I Syrigos, K Katrinis, D Syrivelis, A Reale, D Theodoropoulos, ... 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018	46	2018
Efficient floating-point logarithm unit for FPGAs N Alachiotis, A Stamatakis 2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010	38	2010
dReDBox: A Disaggregated Architectural Perspective for Data Centers N Alachiotis, A Andronikakis, O Papadakis, D Theodoropoulos, ... Hardware Accelerators in Data Centers, 35-56, 2019	33	2019
A reconfigurable architecture for the phylogenetic likelihood function N Alachiotis, A Stamatakis, E Sotiriades, A Dollas Field Programmable Logic and Applications, 2009. FPL 2009. International …, 2009	31	2009
A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ... 2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013	30	2013
A versatile UDP/IP based PC↔ FPGA communication platform N Alachiotis, SA Berger, A Stamatakis 2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012	29	2012
FPGA acceleration of the phylogenetic parsimony kernel? N Alachiotis, A Stamatakis 2011 21st International Conference on Field Programmable Logic and …, 2011	29	2011
Detecting Positive Selection in Populations Using Genetic Data A Koropoulis, N Alachiotis, P Pavlidis Statistical Population Genomics, 87-123, 2020	28	2020
Scalable linkage-disequilibrium-based selective sweep detection: a performance guide N Alachiotis, P Pavlidis GigaScience 5 (1), s13742-016-0114-9, 2016	28	2016
A Dynamic Reconfigurable Architecture for Hybrid Spiking and Convolutional FPGA-Based Neural Network Designs H Irmak, F Corradi, P Detterer, N Alachiotis, D Ziener Journal of Low Power Electronics and Applications 11 (3), 32, 2021	27	2021
Accelerating phylogeny-aware short DNA read alignment with FPGAs N Alachiotis, SA Berger, A Stamatakis 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011	24	2011

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