Ramy K. Aziz

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Victor NizetDistinguished Professor of Pediatrics and PharmacyVerified email at ucsd.edu
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Mark WalkerThe University of QueenslandVerified email at uq.edu.au
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
Mariam R. RizkallahResearch associate, Scientific IT, Fraunhofer IFAMVerified email at ifam.fraunhofer.de
Jonathan MonkUC San DiegoVerified email at ucsd.edu
Marwa ElRakaibyDepartment of Microbiology and Immunology, Faculty of Pharmacy, Cairo UniversityVerified email at pharma.cu.edu.eg
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Theoretical Biology and BioinformaticsVerified email at uni-jena.de
Martina Sanderson-SmithUniversity of Wollongong and IHMRIVerified email at uow.edu.au
Rama SaadVanderbilt University Medical CenterVerified email at vumc.org
Pep CharusantiNNF Center for Biosustainability, Technical University of DenmarkVerified email at biosustain.dtu.dk
Samira DaheshUniversity of California San DiegoVerified email at health.ucsd.edu
Aymen Samir YassinProfessor of Microbiology and Immunology, Faculty of Pharmacy, Cairo UniversityVerified email at pharma.cu.edu.eg
Katelyn McNairResearch Associate, San Diego State UniversityVerified email at mail.sdsu.edu
Gordon D PuschFellowship for Interpretation of GenomesVerified email at xnet.com
Mohammed Mostafa Hassan NoohBiochemistry professor, Faculty of Pharmacy Cairo University & October 6 UniversityVerified email at o6u.edu.eg
Radwa SharafFoundation MedicineVerified email at foundationmedicine.com
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Veronika VonsteinFellowship for Interpretation of GenomesVerified email at theFIG.info

Ramy K. Aziz

Professor of Microbiology & Immunology, CCHE 57357 and Faculty of Pharmacy, Cairo University, Egypt

Verified email at pharma.cu.edu.eg - Homepage

Microbiology and Immunology Microbiome Genomics Bioinformatics Phage


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The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ... BMC genomics 9 (1), 75, 2008	11190	2008
DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps JT Buchanan, AJ Simpson, RK Aziz, GY Liu, SA Kristian, M Kotb, ... Current biology 16 (4), 396-400, 2006	845	2006
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5, 4498, 2014	750	2014
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020	745	2020
DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection MJ Walker, A Hollands, ML Sanderson-Smith, JN Cole, JK Kirk, ... Nature medicine 13 (8), 981-985, 2007	444	2007
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies S Akhter, RK Aziz, RA Edwards Nucleic acids research 40 (16), e126-e126, 2012	415	2012
Minimum information about an uncultivated virus genome (MIUVIG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29, 2019	382	2019
Transposases are the most abundant, most ubiquitous genes in nature RK Aziz, M Breitbart, RA Edwards Nucleic acids research 38 (13), 4207-4217, 2010	339	2010
Helicobacter pylori: a poor man's gut pathogen? MM Khalifa, RR Sharaf, RK Aziz Gut pathogens 2 (1), 2, 2010	316	2010
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ... Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013	303	2013
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity E Bosi, JM Monk, RK Aziz, M Fondi, V Nizet, BØ Palsson Proceedings of the National Academy of Sciences 113 (26), E3801-E3809, 2016	232	2016
Invasive M1T1 group A Streptococcus undergoes a phase‐shift in vivo to prevent proteolytic degradation of multiple virulence factors by SpeB RK Aziz, MJ Pabst, A Jeng, R Kansal, D Low, V Nizet, M Kotb Molecular microbiology 51 (1), 123-134, 2004	232	2004
Rise and Persistence of Global M1T1 Clone of Streptococcus pyogenes RK Aziz, M Kotb Emerging infectious diseases 14 (10), 1511-1517, 2008	227	2008
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012	220	2012
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage R Edwards, A Vega, H Norman, MC Ohaeri, K Levi, E Dinsdale, O Cinek, ... Nature Microbiology 4, 1727–1736, 2019	195	2019
Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes R Saad, MR Rizkallah, RK Aziz Gut Pathogens 4 (1), 16, 2012	160	2012
Pharmacomicrobiomics: The impact of human microbiome variations on systems pharmacology and personalized therapeutics M ElRakaiby, BE Dutilh, MR Rizkallah, A Boleij, JN Cole, RK Aziz OMICS: A Journal of Integrative Biology, 2014	157	2014
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ... Archives of Virology, 1-8, 2020	151	2020
Contaminated water as a source of Helicobacter pylori infection RK Aziz, MM Khalifa, RR Sharaf Journal of Advanced Research, 2015	151	2015
Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes RK Aziz, RA Edwards, WW Taylor, DE Low, A McGeer, M Kotb Journal of bacteriology 187 (10), 3311-3318, 2005	144	2005

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