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Ramy K. Aziz
Ramy K. Aziz
Professor of Microbiology & Immunology, CCHE 57357 and Faculty of Pharmacy, Cairo University, Egypt
Verified email at pharma.cu.edu.eg - Homepage
Title
Cited by
Cited by
Year
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ...
BMC genomics 9 (1), 75, 2008
111902008
DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps
JT Buchanan, AJ Simpson, RK Aziz, GY Liu, SA Kristian, M Kotb, ...
Current biology 16 (4), 396-400, 2006
8452006
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ...
Nature communications 5, 4498, 2014
7502014
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
7452020
DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection
MJ Walker, A Hollands, ML Sanderson-Smith, JN Cole, JK Kirk, ...
Nature medicine 13 (8), 981-985, 2007
4442007
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
S Akhter, RK Aziz, RA Edwards
Nucleic acids research 40 (16), e126-e126, 2012
4152012
Minimum information about an uncultivated virus genome (MIUVIG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29, 2019
3822019
Transposases are the most abundant, most ubiquitous genes in nature
RK Aziz, M Breitbart, RA Edwards
Nucleic acids research 38 (13), 4207-4217, 2010
3392010
Helicobacter pylori: a poor man's gut pathogen?
MM Khalifa, RR Sharaf, RK Aziz
Gut pathogens 2 (1), 2, 2010
3162010
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ...
Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013
3032013
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity
E Bosi, JM Monk, RK Aziz, M Fondi, V Nizet, Bě Palsson
Proceedings of the National Academy of Sciences 113 (26), E3801-E3809, 2016
2322016
Invasive M1T1 group A Streptococcus undergoes a phase‐shift in vivo to prevent proteolytic degradation of multiple virulence factors by SpeB
RK Aziz, MJ Pabst, A Jeng, R Kansal, D Low, V Nizet, M Kotb
Molecular microbiology 51 (1), 123-134, 2004
2322004
Rise and Persistence of Global M1T1 Clone of Streptococcus pyogenes
RK Aziz, M Kotb
Emerging infectious diseases 14 (10), 1511-1517, 2008
2272008
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
2202012
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
R Edwards, A Vega, H Norman, MC Ohaeri, K Levi, E Dinsdale, O Cinek, ...
Nature Microbiology 4, 1727–1736, 2019
1952019
Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes
R Saad, MR Rizkallah, RK Aziz
Gut Pathogens 4 (1), 16, 2012
1602012
Pharmacomicrobiomics: The impact of human microbiome variations on systems pharmacology and personalized therapeutics
M ElRakaiby, BE Dutilh, MR Rizkallah, A Boleij, JN Cole, RK Aziz
OMICS: A Journal of Integrative Biology, 2014
1572014
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ...
Archives of Virology, 1-8, 2020
1512020
Contaminated water as a source of Helicobacter pylori infection
RK Aziz, MM Khalifa, RR Sharaf
Journal of Advanced Research, 2015
1512015
Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes
RK Aziz, RA Edwards, WW Taylor, DE Low, A McGeer, M Kotb
Journal of bacteriology 187 (10), 3311-3318, 2005
1442005
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