PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification R Vadigepalli, P Chakravarthula, DE Zak, JS Schwaber, GE Gonye Omics A Journal of Integrative Biology 7 (3), 235-252, 2003 | 168 | 2003 |
A distributed state estimation and control algorithm for plantwide processes R Vadigepalli, FJ Doyle IEEE Transactions on Control Systems Technology 11 (1), 119-127, 2003 | 112 | 2003 |
Robust control of a multivariable experimental four-tank system R Vadigepalli, EP Gatzke, FJ Doyle Industrial & engineering chemistry research 40 (8), 1916-1927, 2001 | 98 | 2001 |
Decorin protein core affects the global gene expression profile of the tumor microenvironment in a triple-negative orthotopic breast carcinoma xenograft model S Buraschi, T Neill, RT Owens, LA Iniguez, G Purkins, R Vadigepalli, ... Public Library of Science 7 (9), e45559, 2012 | 92 | 2012 |
Chronic ethanol feeding alters mi RNA expression dynamics during liver regeneration RP Dippold, R Vadigepalli, GE Gonye, B Patra, JB Hoek Alcoholism: clinical and experimental research 37, E59-E69, 2013 | 84 | 2013 |
Credible practice of modeling and simulation in healthcare: ten rules from a multidisciplinary perspective A Erdemir, L Mulugeta, JP Ku, A Drach, M Horner, TM Morrison, ... Journal of translational medicine 18 (1), 369, 2020 | 81 | 2020 |
Innervation and neuronal control of the mammalian sinoatrial node a comprehensive atlas P Hanna, MJ Dacey, J Brennan, A Moss, S Robbins, S Achanta, ... Circulation research 128 (9), 1279-1296, 2021 | 77 | 2021 |
Erythroid-induced commitment of K562 cells results in clusters of differentially expressed genes enriched for specific transcription regulatory elements S Addya, MA Keller, K Delgrosso, CM Ponte, R Vadigepalli, GE Gonye, ... Physiological genomics 19 (1), 117-130, 2004 | 71 | 2004 |
MicroRNA profiling in lung cancer reveals new molecular markers for diagnosis CC Solomides, BJ Evans, JM Navenot, R Vadigepalli, SC Peiper, Z Wang Acta cytologica 56 (6), 645-654, 2012 | 69 | 2012 |
HuR contributes to TRAIL resistance by restricting death receptor 4 expression in pancreatic cancer cells C Romeo, MC Weber, M Zarei, D DeCicco, SN Chand, AD Lobo, ... Molecular Cancer Research 14 (7), 599-611, 2016 | 60 | 2016 |
Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei K Freeman, A Brureau, R Vadigepalli, MM Staehle, MM Brureau, ... Journal of neuroinflammation 9, 1-11, 2012 | 60 | 2012 |
Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats RP Dippold, R Vadigepalli, GE Gonye, JB Hoek American Journal of Physiology-Gastrointestinal and Liver Physiology 303 (6 …, 2012 | 59 | 2012 |
Single-cell transcriptional analysis reveals novel neuronal phenotypes and interaction networks involved in the central circadian clock J Park, H Zhu, S O'Sullivan, BA Ogunnaike, DR Weaver, JS Schwaber, ... Frontiers in neuroscience 10, 481, 2016 | 58 | 2016 |
Single-cell glia and neuron gene expression in the central amygdala in opioid withdrawal suggests inflammation with correlated gut dysbiosis SJ O’Sullivan, E Malahias, J Park, A Srivastava, BAS Reyes, J Gorky, ... Frontiers in Neuroscience 13, 665, 2019 | 55 | 2019 |
Effects of developmental lead exposure on the hippocampal transcriptome: influences of sex, developmental period, and lead exposure level JS Schneider, DW Anderson, K Talsania, W Mettil, R Vadigepalli Toxicological Sciences 129 (1), 108-125, 2012 | 50 | 2012 |
Structural analysis of large-scale systems for distributed state estimation and control applications R Vadigepalli, FJ Doyle Iii Control Engineering Practice 11 (8), 895-905, 2003 | 50 | 2003 |
Inputs drive cell phenotype variability J Park, A Brureau, K Kernan, A Starks, S Gulati, B Ogunnaike, J Schwaber, ... Genome research 24 (6), 930-941, 2014 | 48 | 2014 |
Credibility, replicability, and reproducibility in simulation for biomedicine and clinical applications in neuroscience L Mulugeta, A Drach, A Erdemir, CA Hunt, M Horner, JP Ku, JG Myers Jr, ... Frontiers in Neuroinformatics 12, 18, 2018 | 47 | 2018 |
Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius MY Covarrubias, RL Khan, R Vadigepalli, JB Hoek, JS Schwaber Physiological genomics 24 (1), 45-58, 2006 | 42 | 2006 |
Integrated multiomics reveals glucose use reprogramming and identifies a novel hexokinase in alcoholic hepatitis V Massey, A Parrish, J Argemi, M Moreno, A Mello, M García-Rocha, ... Gastroenterology 160 (5), 1725-1740. e2, 2021 | 41 | 2021 |