| Understanding flavivirus capsid protein functions: the tip of the iceberg S Sotcheff, A Routh Pathogens 9 (1), 42, 2020 | 43 | 2020 |
| QTQTN motif upstream of the furin-cleavage site plays a key role in SARS-CoV-2 infection and pathogenesis MN Vu, KG Lokugamage, JA Plante, D Scharton, AO Bailey, S Sotcheff, ... Proceedings of the National Academy of Sciences 119 (32), e2205690119, 2022 | 29 | 2022 |
| Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants E Jaworski, RM Langsjoen, B Mitchell, B Judy, P Newman, JA Plante, ... Elife 10, e68479, 2021 | 22 | 2021 |
| SARS-CoV-2 uses nonstructural protein 16 to evade restriction by IFIT1 and IFIT3 C Schindewolf, K Lokugamage, MN Vu, BA Johnson, D Scharton, ... Journal of virology 97 (2), e01532-22, 2023 | 18 | 2023 |
| ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids S Sotcheff, Y Zhou, J Yeung, Y Sun, JE Johnson, BE Torbett, AL Routh GigaScience 12, giad009, 2023 | 6 | 2023 |
| Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa S Wang, SL Sotcheff, CM Gallardo, E Jaworski, BE Torbett, AL Routh Nucleic acids research 50 (7), e41-e41, 2022 | 6 | 2022 |
| Understanding flavivirus capsid protein functions: the tip of the iceberg. Pathogens. 2020 S Sotcheff, A Routh | 5 | |
| Next-generation sequencing: A new avenue to understand viral RNA–protein interactions Y Zhou, SL Sotcheff, AL Routh Journal of Biological Chemistry 298 (5), 2022 | 4 | 2022 |
| Zika Virus Infection Alters Gene Expression and Poly-Adenylation Patterns in Placental Cells SL Sotcheff, JYC Chen, N Elrod, J Cao, E Jaworski, ... Pathogens 11 (8), 936, 2022 | 2 | 2022 |
| Ubiquitination of Zika Virus Envelope Protein Affects Gene Expression in the Placenta and Embryos of Infected Pregnant Mice MI Giraldo, MG Orozco, S Sotcheff, V Morris, N Elrod, A Routh, SC Weaver, ... JOURNAL OF WOMENS HEALTH 31 (10), A4-A5, 2022 | | 2022 |
| Investigation of a SARS-CoV-2 outbreak in a Texas summer camp resulting from a single introduction DM Swetnam, RE Alvarado, S Sotcheff, BM Mitchell, A McConnell, ... medRxiv, 2022.05. 29.22275277, 2022 | | 2022 |
| The development and use of cutting edge next generation sequencing methodologies to study RNA viruses SL Sotcheff | | 2022 |
| SARS-CoV-2 Uses Nonstructural Protein 16 to Evade Restriction by IFIT1 and IFIT3 (preprint) C Schindewolf, K Lokugamage, M Vu, BA Johnson, D Scharton, JA Plante, ... | | 2022 |
| Investigation of a SARS-CoV-2 outbreak in a Texas summer camp resulting from a single introduction (preprint) DM Swetnam, RE Alvarado, S Sotcheff, BM Mitchell, A McConnell, ... | | 2022 |
| QTQTN motif upstream of the furin-cleavage site plays key role in SARS-CoV-2 infection and pathogenesis.(preprint) MN Vu, K Lokugamage, JA Plante, D Scharton, BA Johnson, S Sotcheff, ... | | 2021 |
