|The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology|
OD Abaan, EC Polley, SR Davis, YJ Zhu, S Bilke, RL Walker, M Pineda, ...
Cancer research 73 (14), 4372-4382, 2013
|A chromatin structure‐based model accurately predicts DNA replication timing in human cells|
Y Gindin, MS Valenzuela, MI Aladjem, PS Meltzer, S Bilke
Molecular systems biology 10 (3), 722, 2014
|Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers|
CA Miller, Y Gindin, C Lu, OL Griffith, M Griffith, D Shen, J Hoog, T Li, ...
Nature communications 7 (1), 1-10, 2016
|DNA methylation signatures reflect aging in patients with nonalcoholic steatohepatitis|
R Loomba, Y Gindin, Z Jiang, E Lawitz, S Caldwell, CS Djedjos, R Xu, ...
JCI insight 3 (2), 2018
|miR-23a impairs bone differentiation in osteosarcoma via down-regulation of GJA1|
Y Gindin, Y Jiang, P Francis, RL Walker, OD Abaan, YJ Zhu, PS Meltzer
Frontiers in genetics 6, 233, 2015
|Mutational Signatures of De-Differentiation in Functional Non-Coding Regions of Melanoma Genomes|
SCJ Parker, J Gartner, I Cardenas-Navia, X Wei, HO Abaan, SS Ajay, ...
PLoS Genetics 8 (8), e1002871, 2012
|Targeted analysis of glycomics liquid chromatography/mass spectrometry data|
JM Dreyfuss, C Jacobs, Y Gindin, G Benson, GO Staples, J Zaia
Analytical and bioanalytical chemistry 399 (2), 727-735, 2011
|Methylation signatures in peripheral blood are associated with marked age acceleration and disease progression in patients with primary sclerosing cholangitis|
M Trauner, Y Gindin, Z Jiang, C Chung, GM Subramanian, RP Myers, ...
JHEP Reports 2 (1), 100060, 2020
|Machine Learning Models Accurately Interpret Liver Histology in Patients with Nonalcoholic Steatohepatitis (Nash)|
H Pokkalla, K Pethia, B Glass, JK Kerner, Y Gindin, L Han, R Huss, ...
Hepatology 70, 121A-122A, 2019
|Replicon: a software to accurately predict DNA replication timing in metazoan cells|
Y Gindin, PS Meltzer, S Bilke
Frontiers in genetics 5, 378, 2014
|Evidence for a functional link between chromosomal breakpoints and aberrant DNA methylation in cancer|
S Bilke, Y Gindin
Frontiers in oncology 4, 46, 2014
|DNA Methylation and Immune Cell Markers Demonstrate Evidence of Accelerated Aging in Patients with Chronic HBV or HCV, with or without HIV Co-Infection|
Y Gindin, A Gaggar, AS Lok, HLA Janssen, C Ferrari, GM Subramanian, ...
Clinical Infectious Diseases, 2020
|Machine Learning Fibrosis Models Based on Liver Histology Images Accurately Characterize the Heterogeneity of Cirrhosis Due to Nonalcoholic Steatohepatitis (NASH)|
ZM Younossi, H Pokkalla, K Pethia, B Glass, JK Kerner, Y Gindin, L Han, ...
Hepatology 70, 1033A-1034A, 2019
|RNA-SEQ FROM PATIENTS WITH PRIMARY SCLEROSING CHOLANGITIS IDENTIFIES A FIBROSIS-INDEPENDENT GENE EXPRESSION SIGNATURE THAT PREDICTS CLINICAL EVENTS|
MH Trauner, Y Gindin, JZ Zhou, R Huss, C Chung, M Subramanian, ...
Hepatology 70, 758A-759A, 2019
|DNA methylation and immune cell markers demonstrate associations of accelerated aging with chronic HCV/HIV co-infection and liver fibrosis|
S Kottilil, Y Gindin, B Emmanuel, A Ghosh, B Poonia, JG Mchutchison, ...
Journal of Hepatology 68, S309-S310, 2018
|DNA methylation and immune cell markers demonstrate evidence of accelerated aging in patients with chronic HBV infection, with improvement during treatment|
Y Gindin, A Gaggar, S Kottilil, Z Jiang, JG Mchutchison, M Subramanian, ...
Journal of Hepatology 68, S63-S64, 2018
|Novel characterization of the gut microbiome in patients with NASH and longitudinal changes associated with histological improvement|
R Loomba, Y Gindin, O Podlaha, Z Jiang, E Lawitz, S Caldwell, S Djedjos, ...
Journal of Hepatology 68, S606, 2018
|Analyzing the association of SCNA boundaries with replication timing|
S Bilke, Y Gindin
Nature biotechnology 30 (11), 1043-1045, 2012
|RNA-seq identifies novel changes in the airway transcriptome associated with smoking and lung cancer|
J Beane, J Vick, Y Gindin, C Anderlind, F Schembri, G Liu, S Wang, ...
D37. SYSTEMS BIOLOGY AND MOLECULAR PROFILING IN PULMONARY HEALTH AND DISEASE …, 2011
|A Fibrosis‐Independent Hepatic Transcriptomic Signature Identifies Drivers of Disease Progression in Primary Sclerosing Cholangitis|
Y Gindin, C Chung, Z Jiang, JZ Zhou, J Xu, AN Billin, RP Myers, ...
Hepatology 73 (3), 1105-1116, 2021