Hendrik-Jan Megens
Hendrik-Jan Megens
Assistant Professor, Animal Breeding and Genomics Centre, Wageningen University
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Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
AM Ramos, RPMA Crooijmans, NA Affara, AJ Amaral, AL Archibald, ...
PloS one 4 (8), e6524, 2009
Strong signatures of selection in the domestic pig genome
CJ Rubin, HJ Megens, AM Barrio, K Maqbool, S Sayyab, D Schwochow, ...
Proceedings of the National Academy of Sciences 109 (48), 19529-19536, 2012
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds
WM Muir, GKS Wong, Y Zhang, J Wang, MAM Groenen, ...
Proceedings of the National Academy of Sciences 105 (45), 17312-17317, 2008
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
MAM Groenen, P Wahlberg, M Foglio, HH Cheng, HJ Megens, ...
Genome research 19 (3), 510-519, 2009
Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape
M Bosse, HJ Megens, O Madsen, Y Paudel, LAF Frantz, LB Schook, ...
PLoS genetics 8 (11), e1003100, 2012
Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
LAF Frantz, JG Schraiber, O Madsen, HJ Megens, A Cagan, M Bosse, ...
Nature genetics 47 (10), 1141-1148, 2015
The development and characterization of a 60K SNP chip for chicken
MAM Groenen, HJ Megens, Y Zare, WC Warren, LDW Hillier, ...
BMC genomics 12, 1-9, 2011
Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics
C Ottoni, LG Flink, A Evin, C Geörg, B De Cupere, W Van Neer, ...
Molecular biology and evolution 30 (4), 824-832, 2013
Signatures of diversifying selection in European pig breeds
S Wilkinson, ZH Lu, HJ Megens, AL Archibald, C Haley, IJ Jackson, ...
PLoS genetics 9 (4), e1003453, 2013
Evolutionary signals of selection on cognition from the great tit genome and methylome
VN Laine, TI Gossmann, KM Schachtschneider, CJ Garroway, O Madsen, ...
Nature communications 7 (1), 10474, 2016
Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication
HJ Megens, RPMA Crooijmans, MS Cristobal, X Hui, N Li, MAM Groenen
Genetics Selection Evolution 40, 1-26, 2008
Linkage disequilibrium decay and haplotype block structure in the pig
AJ Amaral, HJ Megens, RPMA Crooijmans, HCM Heuven, MAM Groenen
Genetics 179 (1), 569-579, 2008
Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression
M Bosse, HJ Megens, LAF Frantz, O Madsen, G Larson, Y Paudel, ...
Nature communications 5 (1), 4392, 2014
A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
F Tortereau, B Servin, L Frantz, HJ Megens, D Milan, G Rohrer, ...
BMC genomics 13 (1), 1-12, 2012
Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
LAF Frantz, JG Schraiber, O Madsen, HJ Megens, M Bosse, Y Paudel, ...
Genome biology 14, 1-12, 2013
Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA
AJ Amaral, L Ferretti, HJ Megens, RPMA Crooijmans, H Nie, ...
PloS one 6 (4), e14782, 2011
Genome‐wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations
DJ Goedbloed, HJ Megens, P Van Hooft, JM Herrero‐Medrano, W Lutz, ...
Molecular ecology 22 (3), 856-866, 2013
Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication
Y Paudel, O Madsen, HJ Megens, LAF Frantz, M Bosse, ...
BMC genomics 14 (1), 1-13, 2013
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