Timothy J Johnson
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The genome sequence of avian pathogenic Escherichia coli strain O1: K1: H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes
TJ Johnson, S Kariyawasam, Y Wannemuehler, P Mangiamele, ...
Journal of bacteriology 189 (8), 3228-3236, 2007
Comparison of Escherichia coli isolates implicated in human urinary tract infection and avian colibacillosis
KE Rodriguez-Siek, CW Giddings, C Doetkott, TJ Johnson, MK Fakhr, ...
Microbiology 151 (6), 2097-2110, 2005
Pathogenomics of the virulence plasmids of Escherichia coli
TJ Johnson, LK Nolan
Microbiology and Molecular Biology Reviews 73 (4), 750-774, 2009
Characterizing the APEC pathotype
KE Rodriguez-Siek, CW Giddings, C Doetkott, TJ Johnson, LK Nolan
Veterinary research 36 (2), 241-256, 2005
Population dynamics of Salmonella enterica serotypes in commercial egg and poultry production
SL Foley, R Nayak, IB Hanning, TJ Johnson, J Han, SC Ricke
Applied and Environmental Microbiology 77 (13), 4273-4279, 2011
DNA sequence of a ColV plasmid and prevalence of selected plasmid-encoded virulence genes among avian Escherichia coli strains
TJ Johnson, KE Siek, SJ Johnson, LK Nolan
Journal of bacteriology 188 (2), 745-758, 2006
The chicken gastrointestinal microbiome
BB Oakley, HS Lillehoj, MH Kogut, WK Kim, JJ Maurer, A Pedroso, ...
FEMS microbiology letters 360 (2), 100-112, 2014
Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates
TJ Johnson, YM Wannemuehler, SJ Johnson, CM Logue, DG White, ...
Applied and environmental microbiology 73 (6), 1976-1983, 2007
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ...
Nature biotechnology 34 (9), 942-949, 2016
Identification of minimal predictors of avian pathogenic Escherichia coli virulence for use as a rapid diagnostic tool
TJ Johnson, Y Wannemuehler, C Doetkott, SJ Johnson, SC Rosenberger, ...
Journal of clinical microbiology 46 (12), 3987-3996, 2008
Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment
JL Danzeisen, HB Kim, RE Isaacson, ZJ Tu, TJ Johnson
PloS one 6 (11), e27949, 2011
Comparison of extraintestinal pathogenic Escherichia coli strains from human and avian sources reveals a mixed subset representing potential zoonotic pathogens
TJ Johnson, Y Wannemuehler, SJ Johnson, AL Stell, C Doetkott, ...
Applied and environmental microbiology 74 (22), 7043-7050, 2008
Captivity humanizes the primate microbiome
JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ...
Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016
Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae
TJ Johnson, EM Bielak, D Fortini, LH Hansen, H Hasman, C Debroy, ...
Plasmid 68 (1), 43-50, 2012
Complete DNA sequence of a ColBM plasmid from avian pathogenic Escherichia coli suggests that it evolved from closely related ColV virulence plasmids
TJ Johnson, SJ Johnson, LK Nolan
Journal of bacteriology 188 (16), 5975-5983, 2006
Salmonella pathogenicity and host adaptation in chicken-associated serovars
SL Foley, TJ Johnson, SC Ricke, R Nayak, J Danzeisen
Microbiology and Molecular Biology Reviews 77 (4), 582-607, 2013
Acquisition of avian pathogenic Escherichia coli plasmids by a commensal E. coli isolate enhances its abilities to kill chicken embryos, grow in human urine, and colonize the …
JA Skyberg, TJ Johnson, JR Johnson, C Clabots, CM Logue, LK Nolan
Infection and immunity 74 (11), 6287-6292, 2006
A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
LC Crossman, RR Chaudhuri, SA Beatson, TJ Wells, M Desvaux, ...
Journal of bacteriology 192 (21), 5822-5831, 2010
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), 2016
Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky …
WF Fricke, PF McDermott, MK Mammel, S Zhao, TJ Johnson, DA Rasko, ...
Applied and Environmental Microbiology 75 (18), 5963-5971, 2009
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