Thierry D.G.A. Mondeel
Thierry D.G.A. Mondeel
PhD student in Computational Systems Biology, University of Amsterdam
Verified email at uva.nl - Homepage
TitleCited byYear
Systems pharmacology: an opinion on how to turn the impossible into grand challenges
HV Westerhoff, S Nakayama, TDGA Mondeel, M Barberis
Drug Discovery Today: Technologies 15, 23-31, 2015
152015
GEMMER: GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae
TDGA Mondeel, F Crémazy, M Barberis
Bioinformatics 34 (12), 2147-2149, 2018
22018
Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
A Abudukelimu, TDGA Mondeel, M Barberis, HV Westerhoff
Biochemical Society Transactions 45 (3), 635-652, 2017
22017
Maps for when the living gets tough: Maneuvering through a hostile energy landscape
TDGA Mondeel, S Rehman, Y Zhang, M Verma, P Dürre, M Barberis, ...
IFAC-PapersOnLine 49 (26), 364-370, 2016
22016
Deciphering the design principles of dynamic cell cycle control
M Barberis, TDGA Mondeel, C Linke, A Supady, A Chasapi, ...
Yeast 32 (Suppl. 1), S62-S62, 2015
12015
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast
TDGA Mondeel, P Holland, J Nielsen, M Barberis
Nucleic acids research 47 (15), 7825-7841, 2019
2019
Nature and Nurture integrated through an adjustable Flux Balance Analysis: The impact of cell-nutrition changes on the Warburg effect in hepatocellular carcinoma
E Weglarz-Tomczak, TDGA Mondeel, DGE Piebes, HV Westerhoff
BioRxiv, 674150, 2019
2019
Design principles of ROS dynamic networks relevant to precision therapies for age-related diseases
A Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ...
bioRxiv, 647776, 2019
2019
[Re] Predicting metabolic biomarkers of human inborn errors of metabolism
TDGA Mondeel, V Ogundipe, HV Westerhoff
ReScience 4 (1), 2018
2018
Deciphering cell's robustness by a multi-scale framework integrating cell cycle and metabolism in yeast
L van der Zee, T Mondeel, H Westerhoff, M Barberis
Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB …, 2018
2018
NET works after all? Engineering robustness through diversity
TDGA Mondeel, S Astrologo, Y Zhang, HV Westerhoff
IFAC-PapersOnLine 51 (19), 128-137, 2018
2018
Coupling Cell Division to Metabolic Pathways Through Transcription
P Holland, J Nielsen, TDGA Mondeel, M Barberis
Elsevier, 2018
2018
Information processing in stochastic two-component signal transduction
DGA Mondeel, R Planqué, J Hulshof
2014
ROS homeostasis in a dynamic model: How to save PD neuron?
A Kolodkin, A Ignatenko, V Sangar, V Simeonidis, B Peters, H Westerhoff, ...
2014
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Articles 1–14