Follow
Thierry D.G.A. Mondeel
Thierry D.G.A. Mondeel
Data Scientist at UWV, PhD in Computational Systems Biology, University of Amsterdam
Verified email at uva.nl - Homepage
Title
Cited by
Cited by
Year
ROS networks: designs, aging, Parkinson’s disease and precision therapies
A N. Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ...
NPJ systems biology and applications 6 (1), 34, 2020
292020
Systems pharmacology: an opinion on how to turn the impossible into grand challenges
HV Westerhoff, S Nakayama, TDGA Mondeel, M Barberis
Drug Discovery Today: Technologies 15, 23-31, 2015
192015
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs
TDGA Mondeel, O Ivanov, HV Westerhoff, W Liebermeister, M Barberis
NPJ systems biology and applications 6 (1), 8, 2020
102020
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast
TDGA Mondeel, P Holland, J Nielsen, M Barberis
Nucleic acids research 47 (15), 7825-7841, 2019
92019
Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
A Abudukelimu, TDGA Mondeel, M Barberis, HV Westerhoff
Biochemical Society Transactions 45 (3), 635-652, 2017
82017
Simultaneous integration of gene expression and nutrient availability for studying the metabolism of hepatocellular carcinoma cell lines
E Weglarz-Tomczak, TDGA Mondeel, DGE Piebes, HV Westerhoff
Biomolecules 11 (4), 490, 2021
52021
GEMMER: GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae
TDGA Mondeel, F Crémazy, M Barberis
Bioinformatics 34 (12), 2147-2149, 2018
52018
Maps for when the living gets tough: maneuvering through a hostile energy landscape
TDGA Mondeel, S Rehman, Y Zhang, M Verma, P Dürre, M Barberis, ...
IFAC-PapersOnLine 49 (26), 364-370, 2016
52016
Modelling Neuronal Excitation: The Hodgkin-Huxley Model
T Mondeel
Thesis work, University of Amsterdam, 2012
42012
Unveiling Forkhead-mediated regulation of yeast cell cycle and metabolic networks
M Barberis, TDGA Mondeel
Computational and Structural Biotechnology Journal, 2022
22022
Simultaneous integration of gene expression and nutrient availability for studying metabolism of hepatocellular carcinoma
E Weglarz-Tomczak, TD Mondeel, DG Piebes, HV Westerhoff
22019
Nature and Nurture integrated through an adjustable Flux Balance Analysis: The impact of cell-nutrition changes on the Warburg effect in hepatocellular carcinoma
E Węglarz-Tomczak, TDGA Mondeel, DGE Piebes, HV Westerhoff
bioRxiv, 674150, 2019
22019
Coupling cell division to metabolic pathways through transcription
P Holland, JB Nielsen, TDGA Mondeel, M Barberis
Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018
22018
Design principles of ROS dynamic networks relevant to precision therapies for age-related diseases
A Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ...
bioRxiv, 647776, 2019
12019
Deciphering the design principles of dynamic cell cycle control
M Barberis, TDGA Mondeel, C Linke, A Supady, A Chasapi, ...
Yeast 32 (Suppl. 1), S62-S62, 2015
12015
Waves, ChIPs, GEMMs, gears, markers and maps: Computational systems biology from cell cycle oscillations to metabolic fluxes
TDGA Mondeel
NARCIS, 2022
2022
ROS networks: designs, aging, Parkinson’s disease and precision therapies
NK Alexey, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ...
NPJ Systems Biology and Applications 6 (1), 2020
2020
[Re] Predicting metabolic biomarkers of human inborn errors of metabolism
TDGA Mondeel, V Ogundipe, HV Westerhoff
ReScience 4 (1), 2018
2018
VU Research Portal
TDGA Mondeel, S Astrologo, Y Zhang, HV Westerhoff
2018
The Multiplex Phase Interlocker: a novel and robust molecular design synchronizing transcription and cell cycle oscillators
T Mondeel, C Linke, S Tognetti, W Liebermeister, M Loog, HV Westerhoff, ...
Mathematical Modeling and High-Performance Computing in Bioinformatics …, 2018
2018
The system can't perform the operation now. Try again later.
Articles 1–20