| ROS networks: designs, aging, Parkinson’s disease and precision therapies A N. Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ... NPJ systems biology and applications 6 (1), 34, 2020 | 40 | 2020 |
| Systems pharmacology: an opinion on how to turn the impossible into grand challenges HV Westerhoff, S Nakayama, TDGA Mondeel, M Barberis Drug Discovery Today: Technologies 15, 23-31, 2015 | 20 | 2015 |
| Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters A Abudukelimu, TDGA Mondeel, M Barberis, HV Westerhoff Biochemical Society Transactions 45 (3), 635-652, 2017 | 12 | 2017 |
| Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs TDGA Mondeel, O Ivanov, HV Westerhoff, W Liebermeister, M Barberis NPJ systems biology and applications 6 (1), 8, 2020 | 11 | 2020 |
| ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast TDGA Mondeel, P Holland, J Nielsen, M Barberis Nucleic acids research 47 (15), 7825-7841, 2019 | 11 | 2019 |
| Simultaneous integration of gene expression and nutrient availability for studying the metabolism of hepatocellular carcinoma cell lines E Weglarz-Tomczak, TDGA Mondeel, DGE Piebes, HV Westerhoff Biomolecules 11 (4), 490, 2021 | 8 | 2021 |
| Maps for when the living gets tough: maneuvering through a hostile energy landscape TDGA Mondeel, S Rehman, Y Zhang, M Verma, P Dürre, M Barberis, ... IFAC-PapersOnLine 49 (26), 364-370, 2016 | 7 | 2016 |
| GEMMER: GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae TDGA Mondeel, F Crémazy, M Barberis Bioinformatics 34 (12), 2147-2149, 2018 | 5 | 2018 |
| Modelling Neuronal Excitation: The Hodgkin-Huxley Model T Mondeel Thesis work, University of Amsterdam, 2012 | 4 | 2012 |
| Unveiling Forkhead-mediated regulation of yeast cell cycle and metabolic networks M Barberis, TDGA Mondeel Computational and Structural Biotechnology Journal, 2022 | 3 | 2022 |
| Simultaneous integration of gene expression and nutrient availability for studying metabolism of hepatocellular carcinoma E Weglarz-Tomczak, TD Mondeel, DG Piebes, HV Westerhoff | 2 | 2019 |
| Nature and Nurture integrated through an adjustable Flux Balance Analysis: The impact of cell-nutrition changes on the Warburg effect in hepatocellular carcinoma E Węglarz-Tomczak, TDGA Mondeel, DGE Piebes, HV Westerhoff bioRxiv, 674150, 2019 | 2 | 2019 |
| Coupling cell division to metabolic pathways through transcription P Holland, JB Nielsen, TDGA Mondeel, M Barberis Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018 | 2 | 2018 |
| ROS networks: designs, aging, Parkinson’s disease and precision therapies NK Alexey, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ... NPJ Systems Biology and Applications 6 (1), 2020 | 1 | 2020 |
| Design principles of ROS dynamic networks relevant to precision therapies for age-related diseases A Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ... bioRxiv, 647776, 2019 | 1 | 2019 |
| NET works after all? Engineering robustness through diversity TDGA Mondeel, S Astrologo, Y Zhang, HV Westerhoff IFAC-PapersOnLine 51 (19), 128-137, 2018 | 1 | 2018 |
| Deciphering the design principles of dynamic cell cycle control M Barberis, TDGA Mondeel, C Linke, A Supady, A Chasapi, ... Yeast 32 (Suppl. 1), S62-S62, 2015 | 1 | 2015 |
| Waves, ChIPs, GEMMs, gears, markers and maps: Computational systems biology from cell cycle oscillations to metabolic fluxes TDGA Mondeel | | 2022 |
| [Re] Predicting metabolic biomarkers of human inborn errors of metabolism TDGA Mondeel, V Ogundipe, HV Westerhoff ReScience 4 (1), 2018 | | 2018 |
| The Multiplex Phase Interlocker: a novel and robust molecular design synchronizing transcription and cell cycle oscillators T Mondeel, C Linke, S Tognetti, W Liebermeister, M Loog, HV Westerhoff, ... SI Kabanikhin, Professor, Corresponding Member of the RAS, Institute of …, 2018 | | 2018 |
Matteo BarberisUniversity of Surrey, United KingdomVerified email at barberislab.com
