Tunahan Cakir
Tunahan Cakir
Department of Bioengineering, Gebze Technical University
Verified email at gtu.edu.tr - Homepage
Cited by
Cited by
Integration of metabolome data with metabolic networks reveals reporter reactions
T Çakır, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2, 50, 2006
Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia
T Çakιr, S Alsan, H Saybaşιlι, A Akιn, KÖ Ülgen
Theoretical Biology and Medical Modelling 4 (1), 48, 2007
A review on computational systems biology of pathogen–host interactions
S Durmuş, T Çakır, A Özgür, R Guthke
Frontiers in Microbiology 6, 235, 2015
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks
T Çakır, B Kırdar, KÖ Ülgen
Biotechnology and bioengineering 86 (3), 251-260, 2004
PHISTO: pathogen–host interaction search tool
S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ...
Bioinformatics 29 (10), 1357-1358, 2013
Metabolic network discovery through reverse engineering of metabolome data
T Çakır, MMWB Hendriks, JA Westerhuis, AK Smilde
Metabolomics 5 (3), 318-329, 2009
Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions
SD Tekir, T Çakır, KÖ Ülgen
Frontiers in Microbiology 3, 46, 2012
Metabolic pathway analysis of enzyme-deficient human red blood cells
T Çakır, CS Tacer, KÖ Ülgen
Biosystems 78 (1-3), 49-67, 2004
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae
T Çakır, B Kırdar, Zİ Önsan, K Ülgen, J Nielsen
BMC systems biology 1 (1), 18, 2007
Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network
M Sertbaş, K Ülgen, T Çakır
FEBS open bio 4, 542-553, 2014
Flux Balance Analysis of a Genome‐Scale Yeast Model Constrained by Exometabolomic Data Allows Metabolic System Identification of Genetically Different Strains
T Çakır, Ç Efe, D Dikicioǧlu, A Hortaçsu, B Kırdar, SG Oliver
Biotechnology progress 23 (2), 320-326, 2007
Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production
T Çakır, KY Arga, MM Altıntaş, KÖ Ülgen
Process biochemistry 39 (12), 2097-2108, 2004
Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation
T Çakır, MJ Khatibipour
Frontiers in Bioengineering and Biotechnology 2, 62, 2014
Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches
S Durmuş Tekir, T Çakır, K Ö Ülgen
Computational biology and chemistry 30 (5), 327-338, 2006
Modelling of calcium dynamics in brain energy metabolism and alzheimer's disease
S Tiveci, A Akın, T Çakır, H Saybaşılı, K Ülgen
Computational biology and chemistry 29 (2), 151-162, 2005
Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma
E Ozcan, T Cakir
Frontiers in Neuroscience 10, 156, 2016
Sparsity as cellular objective to infer directed metabolic networks from steady-state metabolome data: a theoretical analysis
M Öksüz, H Sadıkoğlu, T Çakır
PloS one 8 (12), 2013
Reporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach
T Çakır
Scientific reports 5, 14563, 2015
The role of flexibility and optimality in the prediction of intracellular fluxes of microbial central carbon metabolism
F Tarlak, H Sadıkoğlu, T Çakır
Molecular BioSystems 10 (9), 2459-2465, 2014
Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens
R Guthke, S Gerber, T Conrad, S Vlaic, S Durmuş, T Çakır, FE Sevilgen, ...
Frontiers in Microbiology 7, 570, 2016
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