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Tunahan Cakir
Tunahan Cakir
Department of Bioengineering, Gebze Technical University
Geverifieerd e-mailadres voor gtu.edu.tr - Homepage
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Integration of metabolome data with metabolic networks reveals reporter reactions
T Çakır, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen
Molecular systems biology 2, 50, 2006
1682006
PHISTO: pathogen–host interaction search tool
S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ...
Bioinformatics 29 (10), 1357-1358, 2013
1292013
A review on computational systems biology of pathogen–host interactions
S Durmuş, T Çakır, A Özgür, R Guthke
Frontiers in Microbiology 6, 235, 2015
1172015
Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia
T Çakιr, S Alsan, H Saybaşιlι, A Akιn, KÖ Ülgen
Theoretical Biology and Medical Modelling 4 (1), 48, 2007
1092007
Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks
T Çakır, B Kırdar, KÖ Ülgen
Biotechnology and bioengineering 86 (3), 251-260, 2004
822004
Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions
SD Tekir, T Çakır, KÖ Ülgen
Frontiers in Microbiology 3, 46, 2012
792012
Metabolic network discovery through reverse engineering of metabolome data
T Çakır, MMWB Hendriks, JA Westerhuis, AK Smilde
Metabolomics 5 (3), 318-329, 2009
672009
Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network
M Sertbaş, K Ülgen, T Çakır
FEBS open bio 4, 542-553, 2014
562014
Metabolic pathway analysis of enzyme-deficient human red blood cells
T Çakır, CS Tacer, KÖ Ülgen
Biosystems 78 (1-3), 49-67, 2004
512004
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae
T Çakır, B Kırdar, Zİ Önsan, K Ülgen, J Nielsen
BMC systems biology 1 (1), 18, 2007
452007
Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation
T Çakır, MJ Khatibipour
Frontiers in Bioengineering and Biotechnology 2, 62, 2014
352014
Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production
T Çakır, KY Arga, MM Altıntaş, KÖ Ülgen
Process biochemistry 39 (12), 2097-2108, 2004
342004
Flux Balance Analysis of a Genome‐Scale Yeast Model Constrained by Exometabolomic Data Allows Metabolic System Identification of Genetically Different Strains
T Çakır, Ç Efe, D Dikicioǧlu, A Hortaçsu, B Kırdar, SG Oliver
Biotechnology progress 23 (2), 320-326, 2007
332007
Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma
E Ozcan, T Cakir
Frontiers in Neuroscience 10, 156, 2016
27*2016
Effect of iron and magnesium addition on population dynamics and high value product of microalgae grown in anaerobic liquid digestate
H Ermis, U Guven-Gulhan, T Cakir, M Altinbas
Scientific reports 10 (1), 1-12, 2020
262020
Modelling of calcium dynamics in brain energy metabolism and alzheimer's disease
S Tiveci, A Akın, T Çakır, H Saybaşılı, K Ülgen
Computational biology and chemistry 29 (2), 151-162, 2005
222005
Network-based metabolism-centered screening of potential drug targets in Klebsiella pneumoniae at genome scale
MF Cesur, B Siraj, R Uddin, S Durmuş, T Çakır
Frontiers in Cellular and Infection Microbiology 9, 447, 2020
192020
Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches
S Durmuş Tekir, T Çakır, K Ö Ülgen
Computational biology and chemistry 30 (5), 327-338, 2006
182006
Abnormal brain cholesterol homeostasis in Alzheimer’s disease—a targeted metabolomic and transcriptomic study
VR Varma, HB Lüleci, AM Oommen, S Varma, CT Blackshear, ...
npj Aging and Mechanisms of Disease 7 (1), 1-14, 2021
142021
A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris
E Özcan, SS Selvi, E Nikerel, B Teusink, E Toksoy Öner, T Çakır
Applied Microbiology and Biotechnology 103 (7), 3153-3165, 2019
142019
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Artikelen 1–20