Follow
Justin B. Kinney
Title
Cited by
Cited by
Year
An index for 4 dimensional super conformal theories
JB Kinney, J Maldacena, S Minwalla, S Raju
Communications in Mathematical Physics 275 (1), 209-254, 2007
9042007
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
J Shi, E Wang, JP Milazzo, Z Wang, JB Kinney, CR Vakoc
Nature Biotechnology 33, 661-667, 2015
7782015
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
A Melnikov, A Murugan, X Zhang, T Tesileanu, L Wang, P Rogov, S Feizi, ...
Nature Biotechnology 30 (3), 271-277, 2012
7552012
Equitability, mutual information, and the maximal information coefficient
JB Kinney, GS Atwal
Proceedings of the National Academy of Sciences USA 111 (9), 3354-3359, 2014
6412014
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
4052013
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
JB Kinney, A Murugan, CG Callan, EC Cox
Proceedings of the National Academy of Sciences USA 107 (20), 9158-9163, 2010
3532010
Logomaker: beautiful sequence logos in Python
A Tareen, JB Kinney
Bioinformatics 36 (7), 2272-2274, 2020
3352020
Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization
S Senturk, NH Shirole, DG Nowak, V Corbo, D Pal, A Vaughan, ...
Nature Communications 8, 14370, 2017
1622017
Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites
V Mustonen, J Kinney, CG Callan, M Lässig
Proceedings of the National Academy of Sciences USA 105 (34), 12376-12381, 2008
1372008
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves
RM Adams, T Mora, AM Walczak, JB Kinney
Elife 5, e23156, 2016
1262016
Massively parallel assays and quantitative sequence–function relationships
JB Kinney, DM McCandlish
Annual review of genomics and human genetics 20 (1), 99-127, 2019
1242019
Quantitative Activity Profile and Context Dependence of All Human 5′ Splice Sites
MS Wong, JB Kinney, AR Krainer
Molecular cell 71 (6), 1012-1026.e3, 2018
1002018
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
NM Belliveau, SL Barnes, WT Ireland, DL Jones, MJ Sweredoski, ...
Proceedings of the National Academy of Sciences 115 (21), E4796-E4805, 2018
992018
Precise physical models of protein–DNA interaction from high-throughput data
JB Kinney, G Tkačik, CG Callan
Proceedings of the National Academy of Sciences USA 104 (2), 501-506, 2007
842007
Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression
YJ Sheu, JB Kinney, A Lengronne, P Pasero, B Stillman
Proceedings of the National Academy of Sciences USA 111 (18), E1899-E1908, 2014
642014
A transcription factor addiction in leukemia imposed by the MLL promoter sequence
B Lu, O Klingbeil, Y Tarumoto, TDD Somerville, YH Huang, Y Wei, ...
Cancer Cell 34 (6), 970-981. e8, 2018
572018
Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time
WT Ireland, SM Beeler, E Flores-Bautista, NS McCarty, T Röschinger, ...
Elife 9, e55308, 2020
532020
Mapping DNA sequence to transcription factor binding energy in vivo
SL Barnes, NM Belliveau, WT Ireland, JB Kinney, R Phillips
PLoS computational biology 15 (2), e1006226, 2019
482019
MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect
A Tareen, M Kooshkbaghi, A Posfai, WT Ireland, DM McCandlish, ...
Genome biology 23 (1), 98, 2022
462022
The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer
E Wang, S Kawaoka, JS Roe, J Shi, AF Hohmann, Y Xu, AS Bhagwat, ...
Elife 4, e06377, 2015
462015
The system can't perform the operation now. Try again later.
Articles 1–20