Justin B. Kinney
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An index for 4 dimensional super conformal theories
JB Kinney, J Maldacena, S Minwalla, S Raju
Communications in Mathematical Physics 275 (1), 209-254, 2007
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
A Melnikov, A Murugan, X Zhang, T Tesileanu, L Wang, P Rogov, S Feizi, ...
Nature Biotechnology 30 (3), 271-277, 2012
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
J Shi, E Wang, JP Milazzo, Z Wang, JB Kinney, CR Vakoc
Nature Biotechnology 33, 661-667, 2015
Equitability, mutual information, and the maximal information coefficient
JB Kinney, GS Atwal
Proceedings of the National Academy of Sciences USA 111 (9), 3354-3359, 2014
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
JB Kinney, A Murugan, CG Callan, EC Cox
Proceedings of the National Academy of Sciences USA 107 (20), 9158-9163, 2010
Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites
V Mustonen, J Kinney, CG Callan, M Lässig
Proceedings of the National Academy of Sciences USA 105 (34), 12376-12381, 2008
Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization
S Senturk, NH Shirole, DG Nowak, V Corbo, D Pal, A Vaughan, ...
Nature Communications 8, 14370, 2017
Precise physical models of protein–DNA interaction from high-throughput data
JB Kinney, G Tkačik, CG Callan
Proceedings of the National Academy of Sciences USA 104 (2), 501-506, 2007
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves
RM Adams, T Mora, AM Walczak, JB Kinney
Elife 5, e23156, 2016
Logomaker: beautiful sequence logos in Python
A Tareen, JB Kinney
Bioinformatics 36 (7), 2272-2274, 2020
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
NM Belliveau, SL Barnes, WT Ireland, DL Jones, MJ Sweredoski, ...
Proceedings of the National Academy of Sciences 115 (21), E4796-E4805, 2018
Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression
YJ Sheu, JB Kinney, A Lengronne, P Pasero, B Stillman
Proceedings of the National Academy of Sciences USA 111 (18), E1899-E1908, 2014
Quantitative Activity Profile and Context Dependence of All Human 5′ Splice Sites
MS Wong, JB Kinney, AR Krainer
Molecular cell 71 (6), 1012-1026.e3, 2018
r-modes in accreting neutron stars with magnetoviscous boundary layers
JB Kinney, G Mendell
Physical Review D 67, 024032, 2003
Massively parallel assays and quantitative sequence–function relationships
JB Kinney, DM McCandlish
Annual Review of Genomics and Human Genetics 20, 99-127, 2019
The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer
E Wang, S Kawaoka, JS Roe, J Shi, AF Hohmann, Y Xu, AS Bhagwat, ...
Elife 4, e06377, 2015
Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
YJ Sheu, JB Kinney, B Stillman
Genome research 26 (3), 315-330, 2016
Mapping DNA sequence to transcription factor binding energy in vivo
SL Barnes, NM Belliveau, WT Ireland, JB Kinney, R Phillips
PLoS computational biology 15 (2), e1006226, 2019
Rapid generation of drug-resistance alleles at endogenous loci using CRISPR-Cas9 indel mutagenesis
JJ Ipsaro, C Shen, A Eri, Y Xu, JB Kinney, L Joshua-Tor, CR Vakoc, J Shi
PLoS One 12 (2), e0172177, 2017
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