Lexiang Ji
Lexiang Ji
Computational Biologist at Cygnal Therapeutics
Verified email at cygnaltx.com - Homepage
Title
Cited by
Cited by
Year
Widespread natural variation of DNA methylation within angiosperms
CE Niederhuth, AJ Bewick, L Ji, MS Alabady, K Do Kim, Q Li, NA Rohr, ...
Genome biology 17 (1), 1-19, 2016
2882016
On the origin and evolutionary consequences of gene body DNA methylation
AJ Bewick, L Ji, CE Niederhuth, EM Willing, BT Hofmeister, X Shi, L Wang, ...
Proceedings of the National Academy of Sciences 113 (32), 9111-9116, 2016
2072016
Genomic distribution of H3K9me2 and DNA methylation in a maize genome
PT West, Q Li, L Ji, SR Eichten, J Song, MW Vaughn, RJ Schmitz, ...
PLoS One 9 (8), e105267, 2014
1262014
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower
PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ...
The Plant Cell 29 (9), 2150-2167, 2017
1202017
Widespread long-range cis-regulatory elements in the maize genome
WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ...
Nature plants 5 (12), 1237-1249, 2019
1092019
Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
K Panda, L Ji, DA Neumann, J Daron, RJ Schmitz, RK Slotkin
Genome biology 17 (1), 1-19, 2016
972016
Maize death acids, 9-lipoxygenase–derived cyclopente (a) nones, display activity as cytotoxic phytoalexins and transcriptional mediators
SA Christensen, A Huffaker, F Kaplan, J Sims, S Ziemann, G Doehlemann, ...
Proceedings of the National Academy of Sciences 112 (36), 11407-11412, 2015
852015
The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants
AJ Bewick, CE Niederhuth, L Ji, NA Rohr, PT Griffin, J Leebens-Mack, ...
Genome biology 18 (1), 1-13, 2017
822017
The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae)
CB Cunningham, L Ji, RAW Wiberg, J Shelton, EC McKinney, DJ Parker, ...
Genome Biology and Evolution 7 (12), 3383-3396, 2015
732015
Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth
EY Basenko, T Sasaki, L Ji, CJ Prybol, RM Burckhardt, RJ Schmitz, ...
Proceedings of the National Academy of Sciences 112 (46), E6339-E6348, 2015
562015
Methylated DNA is over-represented in whole-genome bisulfite sequencing data
L Ji, T Sasaki, X Sun, P Ma, ZA Lewis, RJ Schmitz
Frontiers in genetics 5, 341, 2014
542014
Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing
M Yu, L Ji, DA Neumann, D Chung, J Groom, J Westpheling, C He, ...
Nucleic acids research 43 (21), e148-e148, 2015
462015
Identification and characterization of the Populus sucrose synthase gene family
X An, Z Chen, J Wang, M Ye, L Ji, J Wang, W Liao, H Ma
Gene 539 (1), 58-67, 2014
452014
Crop epigenomics: identifying, unlocking, and harnessing cryptic variation in crop genomes
L Ji, DA Neumann, RJ Schmitz
Molecular plant 8 (6), 860-870, 2015
392015
Identification of glutathione S-transferase genes responding to pathogen infestation in Populus tomentosa
W Liao, L Ji, J Wang, Z Chen, M Ye, H Ma, X An
Functional & integrative genomics 14 (3), 517-529, 2014
372014
TET-mediated epimutagenesis of the Arabidopsis thaliana methylome
L Ji, WT Jordan, X Shi, L Hu, C He, RJ Schmitz
Nature communications 9 (1), 1-9, 2018
362018
Monitoring the interplay between transposable element families and DNA methylation in maize
JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci, Z Lu, MC Stitzer, ...
PLoS genetics 15 (9), e1008291, 2019
342019
Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
JM Wendte, Y Zhang, L Ji, X Shi, RR Hazarika, Y Shahryary, F Johannes, ...
Elife 8, e47891, 2019
332019
Multiple genes recruited from hormone pathways partition maize diterpenoid defences
Y Ding, KM Murphy, E Poretsky, S Mafu, B Yang, SN Char, ...
Nature plants 5 (10), 1043-1056, 2019
322019
pENCODE: a plant encyclopedia of DNA elements
AK Lane, CE Niederhuth, L Ji, RJ Schmitz
Annual review of genetics 48, 49-70, 2014
312014
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Articles 1–20