Bernhard Palsson

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Adam FeistUCSD / DTUVerified email at ucsd.edu
Jonathan MonkUC San DiegoVerified email at ucsd.edu
Ines ThieleUniversity of GalwayVerified email at universityofgalway.ie
Nathan E LewisProfessor, University of California, San DiegoVerified email at ucsd.edu
Markus HerrgardCTO, BioInnovation InstituteVerified email at bii.dk
Aarash BordbarSinopia BiosciencesVerified email at sinopiabio.com
Daniel C. ZielinskiProject Scientist, University of California San DiegoVerified email at ucsd.edu
Nathan D. PriceCSO, Thorne HealthTech; Professor, Institute for Systems BiologyVerified email at systemsbiology.org
Laurence YangQueen's UniversityVerified email at queensu.ca
Zachary A. KingVerified email at ucsd.edu
James YurkovichChief Innovation Officer, Phenome HealthVerified email at phenomehealth.org
Donghyuk KimAssociate Professor, School of Energy and Chemical Engineering, UNISTVerified email at unist.ac.kr
Giuseppe PagliaSchool of Medicine and Surgery. Università di Milano-BicoccaVerified email at unimib.it
Jason PapinHarrison Distinguished Teaching Professor of Biomedical Engineering, University of VirginiaVerified email at virginia.edu
Nathan MihVerified email at eng.ucsd.edu
Joshua A. LermanDirector of Computation, Bota BiosciencesVerified email at bota.bio
Stephen S FongVirginia Commonwealth UniversityVerified email at vcu.edu
Jeff OrthComputational Biologist, X, the moonshot factoryVerified email at x.team
Karsten ZenglerUniversity of California, San DiegoVerified email at eng.ucsd.edu
Edward J. O'BrienDirector, Translational Computational Biology, Seres TherapeuticsVerified email at serestherapeutics.com

Bernhard Palsson

UCSD

Verified email at eng.ucsd.edu - Homepage

bioengineering systems biology metabolism cell factories design infectious disease


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What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010	3944	2010
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016	2929	2016
Escherichia coli and Salmonella typhimurium: cellular and molecular biology FC Neidhardt, JL Ingraham (No Title), 1987	2259*	1987
A protocol for generating a high-quality genome-scale metabolic reconstruction I Thiele, BØ Palsson Nature protocols 5 (1), 93-121, 2010	1884	2010
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007	1705	2007
Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007	1614	2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011	1578	2011
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network J Förster, I Famili, P Fu, BØ Palsson, J Nielsen Genome research 13 (2), 244-253, 2003	1390	2003
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110 A Varma, BO Palsson Applied and environmental microbiology 60 (10), 3724-3731, 1994	1301	1994
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) JL Reed, TD Vo, CH Schilling, BO Palsson Genome biology 4 (9), 1-12, 2003	1290	2003
Genome-scale models of microbial cells: evaluating the consequences of constraints ND Price, JL Reed, BØ Palsson Nature Reviews Microbiology 2 (11), 886-897, 2004	1263	2004
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities JS Edwards, BO Palsson Proceedings of the National Academy of Sciences 97 (10), 5528-5533, 2000	1247	2000
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data JS Edwards, RU Ibarra, BO Palsson Nature biotechnology 19 (2), 125-130, 2001	1245	2001
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 535, 2011	1230	2011
Metabolic flux balancing: basic concepts, scientific and practical use A Varma, BO Palsson Bio/technology 12 (10), 994-998, 1994	1188	1994
Systems biology: properties of reconstructed networks BØ Palsson Cambridge university press, 2006	1155	2006
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1142	2013
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	1062	2009
COBRApy: constraints-based reconstruction and analysis for python A Ebrahim, JA Lerman, BO Palsson, DR Hyduke BMC systems biology 7, 1-6, 2013	1052	2013
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth RU Ibarra, JS Edwards, BO Palsson Nature 420 (6912), 186-189, 2002	1031	2002

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