Bernhard Palsson

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Adam FeistUCSD / DTUVerified email at ucsd.edu
Jonathan MonkUC San DiegoVerified email at ucsd.edu
Ines ThieleUniversity of GalwayVerified email at universityofgalway.ie
Nathan E LewisAssociate Professor, University of California, San DiegoVerified email at ucsd.edu
Markus HerrgardCTO, BioInnovation InstituteVerified email at bii.dk
Aarash BordbarSinopia BiosciencesVerified email at sinopiabio.com
Daniel C. ZielinskiProject Scientist, University of California San DiegoVerified email at ucsd.edu
Nathan D. PriceCSO, Thorne HealthTech; Professor, Institute for Systems BiologyVerified email at systemsbiology.org
Laurence YangQueen's UniversityVerified email at queensu.ca
Zachary A. KingVerified email at ucsd.edu
Donghyuk KimAssociate Professor, School of Energy and Chemical Engineering, UNISTVerified email at unist.ac.kr
James YurkovichTranslational Research Fellow at the Institute for Systems BiologyVerified email at systemsbiology.org
Giuseppe PagliaSchool of Medicine and Surgery. Università di Milano-BicoccaVerified email at unimib.it
Jason PapinHarrison Distinguished Teaching Professor of Biomedical Engineering, University of VirginiaVerified email at virginia.edu
Stephen S FongVirginia Commonwealth UniversityVerified email at vcu.edu
Joshua A. LermanDirector of Computation, Bota BiosciencesVerified email at bota.bio
Nathan MihVerified email at eng.ucsd.edu
Karsten ZenglerUniversity of California, San DiegoVerified email at eng.ucsd.edu
Edward J. O'BrienSr. Scientist, Seres TherapeuticsVerified email at serestherapeutics.com
Jan SchellenbergerGrail Bio, LinkedIn, UC San DiegoVerified email at grailbio.com

Bernhard Palsson

UCSD

Verified email at eng.ucsd.edu - Homepage

bioengineering systems biology metabolism cell factories design infectious disease


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010	3723	2010
Escherichia coli and Salmonella: cellular and molecular biology FC Neidhardt	2598*	1996
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016	2562	2016
A protocol for generating a high-quality genome-scale metabolic reconstruction I Thiele, BØ Palsson Nature protocols 5 (1), 93-121, 2010	1794	2010
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007	1691	2007
Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007	1590	2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011	1550	2011
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network J Förster, I Famili, P Fu, BØ Palsson, J Nielsen Genome research 13 (2), 244-253, 2003	1370	2003
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110 A Varma, BO Palsson Applied and environmental microbiology 60 (10), 3724-3731, 1994	1282	1994
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) JL Reed, TD Vo, CH Schilling, BO Palsson Genome biology 4 (9), 1-12, 2003	1278	2003
Genome-scale models of microbial cells: evaluating the consequences of constraints ND Price, JL Reed, BØ Palsson Nature Reviews Microbiology 2 (11), 886-897, 2004	1250	2004
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities JS Edwards, BO Palsson Proceedings of the National Academy of Sciences 97 (10), 5528-5533, 2000	1231	2000
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data JS Edwards, RU Ibarra, BO Palsson Nature biotechnology 19 (2), 125-130, 2001	1229	2001
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson Molecular systems biology 7 (1), 535, 2011	1185	2011
Metabolic flux balancing: basic concepts, scientific and practical use A Varma, BO Palsson Bio/technology 12 (10), 994-998, 1994	1169	1994
Systems biology: properties of reconstructed networks BØ Palsson Cambridge university press, 2006	1147	2006
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1120	2013
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	1053	2009
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth RU Ibarra, JS Edwards, BO Palsson Nature 420 (6912), 186-189, 2002	1022	2002
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007	1000	2007

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