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Sipko van Dam
Sipko van Dam
Head of bioinformatics, Ancora
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Year
Gene co-expression analysis for functional classification and gene–disease predictions
S Van Dam, U Vosa, A van der Graaf, L Franke, JP de Magalhaes
Briefings in bioinformatics 19 (4), 575-592, 2018
9802018
Insights into the evolution of longevity from the bowhead whale genome
M Keane, J Semeiks, AE Webb, YI Li, V Quesada, T Craig, LB Madsen, ...
Cell reports 10 (1), 112-122, 2015
3482015
GeneFriends: a human RNA-seq-based gene and transcript co-expression database
S van Dam, T Craig, JP de Magalhães
Nucleic acids research 43 (D1), D1124-D1132, 2015
1302015
A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels
G Monaco, S van Dam, JL Casal Novo Ribeiro, A Larbi, JP de Magalhães
BMC evolutionary biology 15, 1-14, 2015
1252015
Improving the diagnostic yield of exome-sequencing by predicting gene–phenotype associations using large-scale gene expression analysis
P Deelen, S van Dam, JC Herkert, JM Karjalainen, H Brugge, KM Abbott, ...
Nature communications 10 (1), 2837, 2019
1212019
Brain expression quantitative trait locus and network analyses reveal downstream effects and putative drivers for brain-related diseases
N de Klein, EA Tsai, M Vochteloo, D Baird, Y Huang, CY Chen, ...
Nature genetics 55 (3), 377-388, 2023
992023
A meta-analysis of caloric restriction gene expression profiles to infer common signatures and regulatory mechanisms
M Plank, D Wuttke, S van Dam, SA Clarke, JP de Magalhaes
Molecular BioSystems 8 (4), 1339-1349, 2012
942012
GeneFriends: an online co-expression analysis tool to identify novel gene targets for aging and complex diseases
S van Dam, R Cordeiro, T Craig, J van Dam, SH Wood, JP de Magalhães
BMC genomics 13, 1-14, 2012
832012
Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging
SH Wood, S van Dam, T Craig, R Tacutu, A O’Toole, BJ Merry, ...
Genome biology 16, 1-18, 2015
612015
Overlapping SETBP1 gain-of-function mutations in Schinzel-Giedion syndrome and hematologic malignancies
R Acuna-Hidalgo, P Deriziotis, M Steehouwer, C Gilissen, SA Graham, ...
PLoS genetics 13 (3), e1006683, 2017
462017
Gathering insights on disease etiology from gene expression profiles of healthy tissues
AS Silva, SH Wood, S van Dam, S Berres, A McArdle, JP de Magalhães
Bioinformatics 27 (23), 3300-3305, 2011
242011
Evolution, structure and emerging roles of C1ORF112 in DNA replication, DNA damage responses, and cancer
J Edogbanya, D Tejada‐Martinez, NJ Jones, A Jaiswal, S Bell, R Cordeiro, ...
Cellular and Molecular Life Sciences 78, 4365-4376, 2021
152021
A pilot study on the prevalence of micronutrient imbalances in a Dutch general population cohort and the effects of a digital lifestyle program
J Castela Forte, R Gannamani, P Folkertsma, S Kanthappu, S van Dam, ...
Nutrients 14 (7), 1426, 2022
52022
Development and validation of decision rules models to stratify coronary artery disease, diabetes, and hypertension risk in preventive care: cohort study of returning UK …
J Castela Forte, P Folkertsma, R Gannamani, S Kumaraswamy, S Mount, ...
Journal of personalized medicine 11 (12), 1322, 2021
52021
Changes in blood lipid levels after a digitally enabled cardiometabolic preventive health program: pre-post study in an adult Dutch general population cohort
J Castela Forte, R Gannamani, P Folkertsma, S Kumaraswamy, S Mount, ...
JMIR cardio 6 (1), e34946, 2022
42022
The necessity of incorporating non-genetic risk factors into polygenic risk score models
S van Dam, P Folkertsma, J Castela Forte, DH de Vries, ...
Scientific Reports 13 (1), 1351, 2023
22023
Effect of a digitally-enabled, preventive health program on blood pressure in an adult, Dutch general population cohort: an observational pilot study
J Castela Forte, P Folkertsma, R Gannamani, S Kumaraswamy, ...
International Journal of Environmental Research and Public Health 19 (7), 4171, 2022
22022
Effective questionnaire-based prediction models for type 2 diabetes across several ethnicities: a model development and validation study
M Kokkorakis, P Folkertsma, S van Dam, N Sirotin, S Taheri, O Chagoury, ...
EClinicalMedicine 64, 2023
12023
Development and exploitation of GeneFriends: An online database for gene and transcript co-expression analysis
S van Dam
PQDT-Global, 2017
12017
A Digitally Enabled Combined Lifestyle Intervention for Weight Loss: Pilot Study in a Dutch General Population Cohort
R Gannamani, J Castela Forte, P Folkertsma, S Hermans, ...
JMIR Formative Research 8, e38891, 2024
2024
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