Joshua J. Waterfall
Joshua J. Waterfall
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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
LJ Core, JJ Waterfall, JT Lis
Science 322 (5909), 1845-1848, 2008
Universally sloppy parameter sensitivities in systems biology models
RN Gutenkunst, JJ Waterfall, FP Casey, KS Brown, CR Myers, JP Sethna
PLoS Comput Biol 3 (10), e189, 2007
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
IM Min, JJ Waterfall, LJ Core, RJ Munroe, J Schimenti, JT Lis
Genes & development 25 (7), 742-754, 2011
Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor
JK Killian, SY Kim, M Miettinen, C Smith, M Merino, M Tsokos, M Quezado, ...
Cancer discovery 3 (6), 648-657, 2013
Defining the status of RNA polymerase at promoters
LJ Core, JJ Waterfall, DA Gilchrist, DC Fargo, H Kwak, K Adelman, JT Lis
Cell reports 2 (4), 1025-1035, 2012
High prevalence of MAP2K1 mutations in variant and IGHV4-34–expressing hairy-cell leukemias
JJ Waterfall, E Arons, RL Walker, M Pineda, L Roth, JK Killian, OD Abaan, ...
Nature genetics 46 (1), 8-10, 2014
Recurrent epimutation of SDHC in gastrointestinal stromal tumors
JK Killian, M Miettinen, RL Walker, Y Wang, YJ Zhu, JJ Waterfall, N Noyes, ...
Science translational medicine 6 (268), 268ra177-268ra177, 2014
Sloppy-model universality class and the Vandermonde matrix
JJ Waterfall, FP Casey, RN Gutenkunst, KS Brown, CR Myers, ...
Physical review letters 97 (15), 150601, 2006
Common molecular subtypes among Asian hepatocellular carcinoma and cholangiocarcinoma
J Chaisaingmongkol, A Budhu, H Dang, S Rabibhadana, B Pupacdi, ...
Cancer cell 32 (1), 57-70. e3, 2017
Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant
J Li, SL Woods, S Healey, J Beesley, X Chen, JS Lee, H Sivakumaran, ...
The American Journal of Human Genetics 98 (5), 830-842, 2016
Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model
FP Casey, D Baird, Q Feng, RN Gutenkunst, JJ Waterfall, CR Myers, ...
IET systems biology 1 (3), 190-202, 2007
The epigenetic control of stemness in CD8+ T cell fate commitment
L Pace, C Goudot, E Zueva, P Gueguen, N Burgdorf, JJ Waterfall, ...
Science 359 (6372), 177-186, 2018
Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling
L Grøntved, JJ Waterfall, DW Kim, S Baek, MH Sung, L Zhao, JW Park, ...
Nature communications 6 (1), 1-11, 2015
Extracting falsifiable predictions from sloppy models
RN Gutenkunst, FP Casey, JJ Waterfall, CR Myers, JP Sethna
arXiv preprint arXiv:0704.3049, 2007
Harnessing synthetic lethality to predict the response to cancer treatment
JS Lee, A Das, L Jerby-Arnon, R Arafeh, N Auslander, M Davidson, ...
Nature communications 9 (1), 1-12, 2018
Imprints and DPPA3 are bypassed during pluripotency-and differentiation-coupled methylation reprogramming in testicular germ cell tumors
JK Killian, LCJ Dorssers, B Trabert, AJM Gillis, MB Cook, Y Wang, ...
Genome research 26 (11), 1490-1504, 2016
Clonally expanded T cells reveal immunogenicity of rhabdoid tumors
A Leruste, J Tosello, RN Ramos, A Tauziède-Espariat, S Brohard, ZY Han, ...
Cancer Cell 36 (6), 597-612. e8, 2019
RN Gutenkunst, FP Casey, JJ Waterfall, JC Atlas, RS Kuczenski, ...
Ithaca (New York): Cornell University, 2007
The role of mutation of metabolism-related genes in genomic hypermethylation
JJ Waterfall, JK Killian, PS Meltzer
Biochemical and biophysical research communications 455 (1-2), 16-23, 2014
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