Jose C. Clemente

Cited by

	All	Since 2016
Citations	45865	36403
h-index	51	50
i10-index	78	71

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2012201320142015201620172018201920202021595 1643 2727 3865 5067 6117 7038 8108 9611 400

Co-authors

Rob KnightDirector, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSDVerified email at ucsd.edu
Jeremiah FaithIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
Dan KnightsUniversity of MinnesotaVerified email at umn.edu
J Gregory CaporasoNorthern Arizona UniversityVerified email at nau.edu
Martin BlaserProfessor of Medicine and Microbiology, Rutgers UniversityVerified email at cabm.rutgers.edu
Benjamin G WuNYU School of MedicineVerified email at nyumc.org
William A WaltersPost-doc, Cornell UniversityVerified email at colorado.edu
Nan ShenIcahn School of Medicine at Mount SinaiVerified email at icahn.mssm.edu
Maria Gloria Dominguez-BelloProfessor, Director, NJ Institute for Food, Nutrition and Health, Rutgers UniversityVerified email at rutgers.edu
Luke K UrsellBiota TechnologyVerified email at biota.com
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverVerified email at ucdenver.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
Christian L LauberNationwide Children's HospitalVerified email at nationwidechildrens.org
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDVerified email at ucsd.edu
Dirk GeversJanssen Human Microbiome InstituteVerified email at its.jnj.com
Will Van TreurenPhD Microbiology and Immunology, Stanford UniversityVerified email at stanford.edu
Jai Ram RideoutDogfox Software LLCVerified email at dogfoxsoftware.com
Laura Wegener ParfreyAssistant Professor, University of British ColumbiaVerified email at botany.ubc.ca
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Federico E. ReyUniversity of Wisconsin-MadisonVerified email at wisc.edu

Jose C. Clemente

Associate Professor, Icahn School of Medicine at Mount Sinai

Verified email at mssm.edu - Homepage

Microbiome Computational Biology Machine Learning Bioinformatics Immunology


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UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011	9362	2011
Structure, function and diversity of the healthy human microbiome Human Microbiome Project Consortium Nature 486 (7402), 207-214, 2012	6120*	2012
Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... Nature 486 (7402), 222-227, 2012	5099	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature Biotechnology, 2013	4806	2013
Gut microbiota from twins discordant for obesity modulate metabolism in mice VK Ridaura, JJ Faith, FE Rey, J Cheng, AE Duncan, AL Kau, NW Griffin, ... Science 341 (6150), 2013	2644	2013
The impact of the gut microbiota on human health: an integrative view JC Clemente, LK Ursell, LW Parfrey, R Knight Cell 148 (6), 1258-1270, 2012	2522	2012
A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... Nature 486 (7402), 215, 2012	1559	2012
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011	1373	2011
The long-term stability of the human gut microbiota JJ Faith, JL Guruge, M Charbonneau, S Subramanian, H Seedorf, ... Science 341 (6141), 2013	1333	2013
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 2017	874	2017
Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... Elife 2, e00458, 2013	732	2013
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250, 2016	631	2016
Experimental and analytical tools for studying the human microbiome J Kuczynski, CL Lauber, WA Walters, LW Parfrey, JC Clemente, D Gevers, ... Nature Reviews Genetics 13 (1), 47-58, 2012	608	2012
The microbiome of uncontacted Amerindians JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ... Science Advances 1 (3), e1500183, 2015	550	2015
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012	511	2012
The microbiome in early life: implications for health outcomes S Tamburini, N Shen, HC Wu, JC Clemente Nature Medicine 22 (7), 713-722, 2016	494	2016
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014	446	2014
Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States N Fierer, J Ladau, JC Clemente, JW Leff, SM Owens, KS Pollard, R Knight, ... Science 342 (6158), 621-624, 2013	364	2013
Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice FA Carvalho, O Koren, JK Goodrich, MEV Johansson, I Nalbantoglu, ... Cell host & microbe 12 (2), 139-152, 2012	336	2012
Intestinal Microbiota Is Influenced by Gender and Body Mass Index C Haro, OA Rangel-Zúñiga, JF Alcalá-Díaz, F Gómez-Delgado, ... PloS one 11 (5), e0154090, 2016	317	2016

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