Istvan Ladunga
Istvan Ladunga
Professor Emeritus of Computational Biology, University of Nebraska-Lincoln
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PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
PD Thomas, A Kejariwal, MJ Campbell, H Mi, K Diemer, N Guo, I Ladunga, ...
Nucleic acids research 31 (1), 334-341, 2003
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS Comput Biol 9 (11), e1003326, 2013
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
G Blanc, I Agarkova, J Grimwood, A Kuo, A Brueggeman, DD Dunigan, ...
Genome biology 13 (5), 1-12, 2012
Comparisons of eukaryotic genomic sequences
S Karlin, I Ladunga
Proceedings of the National Academy of Sciences 91 (26), 12832-12836, 1994
Heterogeneity of genomes: measures and values
S Karlin, I Ladunga, BE Blaisdell
Proceedings of the National Academy of Sciences 91 (26), 12837-12841, 1994
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions
A Saleh, R Alvarez-Venegas, M Yilmaz, O Le, G Hou, M Sadder, ...
The Plant Cell 20 (3), 568-579, 2008
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
K Van Dijk, Y Ding, S Malkaram, JJM Riethoven, R Liu, J Yang, P Laczko, ...
BMC plant biology 10 (1), 1-12, 2010
Transcriptome-wide changes in Chlamydomonas reinhardtii gene expression regulated by carbon dioxide and the CO2-concentrating mechanism regulator CIA5/CCM1
W Fang, Y Si, S Douglass, D Casero, SS Merchant, M Pellegrini, ...
The Plant Cell 24 (5), 1876-1893, 2012
The sigma-1 receptor enhances brain plasticity and functional recovery after experimental stroke
K Ruscher, M Shamloo, M Rickhag, I Ladunga, L Soriano, L Gisselsson, ...
Brain 134 (3), 732-746, 2011
Activation of the carbon concentrating mechanism by CO2 deprivation coincides with massive transcriptional restructuring in Chlamydomonas reinhardtii
AJ Brueggeman, DS Gangadharaiah, MF Cserhati, D Casero, DP Weeks, ...
The Plant Cell 24 (5), 1860-1875, 2012
RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses
D Panda, A Das, PX Dinh, S Subramaniam, D Nayak, NJ Barrows, ...
Proceedings of the National Academy of Sciences 108 (47), 19036-19041, 2011
More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature
I Ladunga
Nucleic acids research 35 (2), 433-440, 2007
Transcriptional profiling of the sperm storage organs of Drosophila melanogaster
AM Prokupek, SD Kachman, I Ladunga, LG Harshman
Insect molecular biology 18 (4), 465-475, 2009
Large-scale predictions of secretory proteins from mammalian genomic and EST sequences
I Ladunga
Current Opinion in Biotechnology 11 (1), 13-18, 2000
Improving signal peptide prediction accuracy by simulated neural network
I Ladunga, F Czako, I Csabai, T Geszti
Bioinformatics 7 (4), 485-487, 1991
Browsable database for biological use
P Thomas, A Kejariwal, M Champbell, H Mi, K Diemer, N Guo, I Ladunga, ...
US Patent App. 10/731,875, 2005
Finding homologs in amino acid sequences using network BLAST searches
I Ladunga
Current protocols in bioinformatics 25 (1), 3.4. 1-3.4. 34, 2009
Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties.
I Ladunga, RF Smith
Protein engineering 10 (3), 187-196, 1997
The Small Ubiquitin-Like Modifier (SUMO) and SUMO-Conjugating System of Chlamydomonas reinhardtii
Y Wang, I Ladunga, AR Miller, KM Horken, T Plucinak, DP Weeks, ...
Genetics 179 (1), 177-192, 2008
PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids
I Ladunga
Bioinformatics 15 (12), 1028-1038, 1999
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