| Vision using multiple distinct rod opsins in deep-sea fishes Z Musilova, F Cortesi, M Matschiner, WIL Davies, JS Patel, SM Stieb, ... Science 364 (6440), 588-592, 2019 | 183 | 2019 |
| Steered molecular dynamics simulations for studying protein–ligand interaction in cyclin-dependent kinase 5 JS Patel, A Berteotti, S Ronsisvalle, W Rocchia, A Cavalli Journal of chemical information and modeling 54 (2), 470-480, 2014 | 172 | 2014 |
| The pesticide chlorpyrifos promotes obesity by inhibiting diet-induced thermogenesis in brown adipose tissue B Wang, EE Tsakiridis, S Zhang, A Llanos, EM Desjardins, JM Yabut, ... Nature communications 12 (1), 1-12, 2021 | 61 | 2021 |
| Fast calculation of protein–protein binding free energies using umbrella sampling with a coarse-grained model JS Patel, FM Ytreberg Journal of chemical theory and computation 14 (2), 991-997, 2018 | 38 | 2018 |
| Molecular modeling on inhibitor complexes and active-site dynamics of cytochrome P450 C17, a target for prostate cancer therapy SM Haider, JS Patel, CS Poojari, S Neidle Journal of molecular biology 400 (5), 1078-1098, 2010 | 34 | 2010 |
| Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness J Yang, N Naik, JS Patel, CS Wylie, W Gu, J Huang, FM Ytreberg, MT Naik, ... PloS one 15 (5), e0233509, 2020 | 27 | 2020 |
| Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression A González-González, SM Hug, A Rodríguez-Verdugo, JS Patel, BS Gaut Molecular biology and evolution 34 (11), 2839-2855, 2017 | 27 | 2017 |
| Expanding the watch list for potential Ebola virus antibody escape mutations JS Patel, CJ Quates, EL Johnson, FM Ytreberg PloS one 14 (3), e0211093, 2019 | 23 | 2019 |
| EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde JV Bazurto, DD Nayak, T Ticak, M Davlieva, JA Lee, CN Hellenbrand, ... PLoS biology 19 (5), e3001208, 2021 | 19* | 2021 |
| Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations JS Patel, CJ Brown, FM Ytreberg, DL Stenkamp PLOS Computational Biology 14 (1), e1005974, 2018 | 18 | 2018 |
| Targeting SUMOylation dependency in human cancer stem cells through a unique SAE2 motif revealed by chemical genomics YD Benoit, RR Mitchell, W Wang, L Orlando, AL Boyd, B Tanasijevic, ... Cell chemical biology 28 (10), 1394-1406. e10, 2021 | 15 | 2021 |
| Implementing and assessing an alchemical method for calculating protein–protein binding free energy D Patel, JS Patel, FM Ytreberg Journal of chemical theory and computation 17 (4), 2457-2464, 2021 | 15 | 2021 |
| Assessment of software methods for estimating protein-protein relative binding affinities TR Gonzalez, KP Martin, JE Barnes, JS Patel, FM Ytreberg PLoS One 15 (12), e0240573, 2020 | 15 | 2020 |
| Insights into ligand–protein binding from local mechanical response JS Patel, D Branduardi, M Masetti, W Rocchia, A Cavalli Journal of Chemical Theory and Computation 7 (10), 3368-3378, 2011 | 15 | 2011 |
| Paired Simulations and Experimental Investigations into the Calcium-Dependent Conformation of Albumin D Patel, SL Haag, JS Patel, FM Ytreberg, MT Bernards Journal of chemical information and modeling 62 (5), 1282-1293, 2022 | 8 | 2022 |
| Molecular modeling predicts novel antibody escape mutations in the respiratory syncytial virus fusion glycoprotein SS Beach, MKA Hull, FM Ytreberg, JS Patel, TA Miura Journal of Virology 96 (13), e00353-22, 2022 | 7 | 2022 |
| Electrostatic Switching Controls Channel Dynamics of the Sensor Protein VirB10 in A. tumefaciens Type IV Secretion System VC Darbari, J Ciccone, JS Patel, B Islam, PK Agarwal, S Haider ACS omega 5 (7), 3271-3281, 2020 | 7 | 2020 |
| The Characterization of a Novel Virus Discovered in the Yeast Pichia membranifaciens MD Lee, JW Creagh, LR Fredericks, AM Crabtree, JS Patel, PA Rowley Viruses 14 (3), 594, 2022 | 6* | 2022 |
| Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance D Patel, JE Barnes, WIL Davies, DL Stenkamp, JS Patel PLoS computational biology 16 (10), e1008212, 2020 | 4 | 2020 |
| The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6 JE Barnes, PK Lund-Andersen, JS Patel, FM Ytreberg Scientific Reports 12 (1), 18819, 2022 | 3 | 2022 |
F. Marty YtrebergUniversity of IdahoGeverifieerd e-mailadres voor uidaho.edu
