Spencer E Bliven
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Pre-calculated protein structure alignments at the RCSB PDB website
A Prlić, S Bliven, PW Rose, WF Bluhm, C Bizon, A Godzik, PE Bourne
Bioinformatics 26 (23), 2983-2985, 2010
BioJava: an open-source framework for bioinformatics in 2012
A Prlić, A Yates, SE Bliven, PW Rose, J Jacobsen, PV Troshin, ...
Bioinformatics 28 (20), 2693-2695, 2012
Determining cysteines available for covalent inhibition across the human kinome
Z Zhao, Q Liu, S Bliven, L Xie, PE Bourne
Journal of medicinal chemistry 60 (7), 2879-2889, 2017
Structure of the Full-length VEGFR-1 Extracellular Domain in Complex with VEGF-A
S Markovic-Mueller, E Stuttfeld, M Asthana, T Weinert, S Bliven, ...
Structure 25 (2), 341-352, 2017
Circular permutation in proteins
S Bliven, A Prlić
PLoS computational biology 8 (3), e1002445, 2012
Automated evaluation of quaternary structures from protein crystals
S Bliven, A Lafita, A Parker, G Capitani, JM Duarte
PLoS computational biology 14 (4), e1006104, 2018
A PDB-wide, evolution-based assessment of protein-protein interfaces
K Baskaran, JM Duarte, N Biyani, S Bliven, G Capitani
BMC Structural Biology 14, 1-11, 2014
Assessment of protein assembly prediction in CASP12
A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ...
Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018
Systems biology of the structural proteome
E Brunk, N Mih, J Monk, Z Zhang, EJ O’Brien, SE Bliven, K Chen, ...
BMC systems biology 10, 1-16, 2016
Systematic detection of internal symmetry in proteins using CE-Symm
D Myers-Turnbull, SE Bliven, PW Rose, ZK Aziz, P Youkharibache, ...
Journal of molecular biology 426 (11), 2255-2268, 2014
BioJava 5: A community driven open-source bioinformatics library
A Lafita, S Bliven, A Prlić, D Guzenko, PW Rose, A Bradley, P Pavan, ...
PLoS computational biology 15 (2), e1006791, 2019
Determining crystal structures through crowdsourcing and coursework
S Horowitz, B Koepnick, R Martin, A Tymieniecki, AA Winburn, S Cooper, ...
Nature communications 7 (1), 12549, 2016
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts
G Capitani, JM Duarte, K Baskaran, S Bliven, JC Somody
Bioinformatics 32 (4), 481-489, 2016
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
SE Bliven, A Lafita, PW Rose, G Capitani, A Prlić, PE Bourne
PLoS computational biology 15 (4), e1006842, 2019
Detection of circular permutations within protein structures using CE-CP
SE Bliven, PE Bourne, A Prlić
Bioinformatics 31 (8), 1316-1318, 2015
Biological and functional relevance of CASP predictions
T Liu, S Ish‐Shalom, W Torng, A Lafita, C Bock, M Mort, DN Cooper, ...
Proteins: Structure, Function, and Bioinformatics 86, 374-386, 2018
TRAL 2.0: Tandem repeat detection with circular profile hidden markov models and evolutionary aligner
M Delucchi, P Näf, S Bliven, M Anisimova
Frontiers in Bioinformatics 1, 691865, 2021
Molql: towards a common general purpose molecular query language
AS Rose, D Sehnal, S Bliven, SK Burley, S Velankar
Biophysical Journal 114 (3), 342a, 2018
Low-pass spectral analysis of time-resolved serial femtosecond crystallography data
CM Casadei, A Hosseinizadeh, S Bliven, T Weinert, J Standfuss, R Fung, ...
Structural Dynamics 10 (3), 2023
Automated evaluation of quaternary structures from protein crystal structures
JM Duarte, S Bliven, A Lafita, G Capitani, SK Burley
Acta Crystallogr. Sect. A Found. Adv 73, a117, 2017
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