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Szymon M. Kiełbasa
Szymon M. Kiełbasa
Biomedical Data Sciences
Verified email at lumc.nl
Title
Cited by
Cited by
Year
Adaptive seeds tame genomic sequence comparison
SM Kiełbasa, R Wan, K Sato, P Horton, MC Frith
Genome research 21 (3), 487-493, 2011
10112011
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
4662020
Disease variants alter transcription factor levels and methylation of their binding sites
MJ Bonder, R Luijk, DV Zhernakova, M Moed, P Deelen, M Vermaat, ...
Nature genetics 49 (1), 131-138, 2017
3572017
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
3512013
Identification of context-dependent expression quantitative trait loci in whole blood
DV Zhernakova, P Deelen, M Vermaat, M Van Iterson, M Van Galen, ...
Nature genetics 49 (1), 139-145, 2017
3342017
Regulation of clock-controlled genes in mammals
K Bozek, A Relogio, SM Kielbasa, M Heine, C Dame, A Kramer, H Herzel
PloS one 4 (3), e4882, 2009
2982009
Genetic and environmental influences interact with age and sex in shaping the human methylome
J Van Dongen, MG Nivard, G Willemsen, JJ Hottenga, Q Helmer, ...
Nature communications 7 (1), 1-13, 2016
2712016
Biological profiling of gene groups utilizing Gene Ontology
N Blüthgen, K Brand, B Cajavec, M Swat, H Herzel, D Beule
Genome Informatics 16 (1), 106-115, 2005
2392005
Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation
PM Krawitz, Y Murakami, J Hecht, U Krüger, SE Holder, GR Mortier, ...
The American Journal of Human Genetics 91 (1), 146-151, 2012
1462012
DNA methylation analysis identifies loci for blood pressure regulation
MA Richard, T Huan, S Ligthart, R Gondalia, MA Jhun, JA Brody, MR Irvin, ...
The American Journal of Human Genetics 101 (6), 888-902, 2017
1232017
Improving phenotypic prediction by combining genetic and epigenetic associations
S Shah, MJ Bonder, RE Marioni, Z Zhu, AF McRae, A Zhernakova, ...
The American Journal of Human Genetics 97 (1), 75-85, 2015
1142015
RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage
RC de Almeida, YFM Ramos, A Mahfouz, W den Hollander, N Lakenberg, ...
Annals of the rheumatic diseases 78 (2), 270-277, 2019
962019
Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells
K Jürchott, RJ Kuban, T Krech, N Blüthgen, U Stein, W Walther, C Friese, ...
PLoS genetics 6 (12), e1001231, 2010
912010
Two Plasmodium 6‐Cys family‐related proteins have distinct and critical roles in liver‐stage development
T Annoura, BCL van Schaijk, IHJ Ploemen, M Sajid, J Lin, MW Vos, ...
The FASEB Journal 28 (5), 2158-2170, 2014
902014
Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression
RG De Bruin, L Shiue, J Prins, HC De Boer, A Singh, WS Fagg, ...
Nature communications 7 (1), 1-20, 2016
812016
Measuring similarities between transcription factor binding sites
SM Kielbasa, D Gonze, H Herzel
BMC bioinformatics 6 (1), 1-11, 2005
792005
HuSiDa—the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells
M Truss, M Swat, SM Kielbasa, R Schäfer, H Herzel, C Hagemeier
Nucleic acids research 33 (suppl_1), D108-D111, 2005
722005
Inferring combinatorial regulation of transcription in silico
N Blüthgen, SM Kiełbasa, H Herzel
Nucleic Acids Research 33 (1), 272-279, 2005
722005
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale
T Zemojtel, SM Kielbasa, PF Arndt, HR Chung, M Vingron
Trends in genetics 25 (2), 63-66, 2009
702009
A systems biological approach suggests that transcriptional feedback regulation by dual‐specificity phosphatase 6 shapes extracellular signal‐related kinase activity in RAS …
N Blüthgen, S Legewie, SM Kielbasa, A Schramme, O Tchernitsa, J Keil, ...
The FEBS journal 276 (4), 1024-1035, 2009
692009
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