Zhenjiang Zech Xu
Zhenjiang Zech Xu
State Key Laboratory of Food Science and Technology, Nanchang University
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
18112019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9072017
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5 (1), 1-18, 2017
7192017
Meta-analyses of human gut microbes associated with obesity and IBD
WA Walters, Z Xu, R Knight
FEBS letters 588 (22), 4223-4233, 2014
5882014
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5202018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5192018
Advancing Our Understanding of the Human Microbiome Using QIIME.
JA Navas-Molina, JM Peralta-Sanchezl, A Gonzalezl, PJ McMurdieI, ...
Methods in Enzymology, 371, 2013
4552013
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
4352016
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
MSystems 2 (2), 2017
4342017
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
3592016
Subsistence strategies in traditional societies distinguish gut microbiomes
AJ Obregon-Tito, RY Tito, J Metcalf, K Sankaranarayanan, JC Clemente, ...
Nature communications 6 (1), 1-9, 2015
2892015
Dietary effects on human gut microbiome diversity
Z Xu, R Knight
British Journal of Nutrition 113 (S1), S1-S5, 2015
2892015
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
2682016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2152018
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight
MSystems 1 (3), 2016
1902016
Prediction of early childhood caries via spatial-temporal variations of oral microbiota
F Teng, F Yang, S Huang, C Bo, ZZ Xu, A Amir, R Knight, J Ling, J Xu
Cell host & microbe 18 (3), 296-306, 2015
1302015
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ...
Nature communications 9 (1), 1-13, 2018
1142018
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor
MP Vockenhuber, CM Sharma, MG Statt, D Schmidt, Z Xu, S Dietrich, ...
RNA biology 8 (3), 468-477, 2011
1002011
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 2016
942016
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
J Debelius, SJ Song, Y Vazquez-Baeza, ZZ Xu, A Gonzalez, R Knight
Genome biology 17 (1), 1-12, 2016
832016
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