Craig D. Wenger
Craig D. Wenger
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Value of using multiple proteases for large-scale mass spectrometry-based proteomics
DL Swaney, CD Wenger, JJ Coon
Journal of proteome research 9 (3), 1323-1329, 2010
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
MV Lee, SE Topper, SL Hubler, J Hose, CD Wenger, JJ Coon, AP Gasch
Molecular systems biology 7 (1), 514, 2011
Proteomic and phosphoproteomic comparison of human ES and iPS cells
DH Phanstiel, J Brumbaugh, CD Wenger, S Tian, MD Probasco, DJ Bailey, ...
Nature methods 8 (10), 821-827, 2011
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging
CD Wenger, MV Lee, AS Hebert, GC McAlister, DH Phanstiel, ...
Nature methods 8 (11), 933-935, 2011
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
DL Swaney, CD Wenger, JA Thomson, JJ Coon
Proceedings of the National Academy of Sciences 106 (4), 995-1000, 2009
Phosphoproteomics for the masses
PA Grimsrud, DL Swaney, CD Wenger, NA Beauchene, JJ Coon
ACS chemical biology 5 (1), 105-119, 2010
COMPASS: A suite of pre‐and post‐search proteomics software tools for OMSSA
CD Wenger, DH Phanstiel, MV Lee, DJ Bailey, JJ Coon
Proteomics 11 (6), 1064-1074, 2011
A proteomics search algorithm specifically designed for high-resolution tandem mass spectra
CD Wenger, JJ Coon
Journal of proteome research 12 (3), 1377-1386, 2013
Top-down proteomics on a chromatographic time scale using linear ion trap Fourier transform hybrid mass spectrometers
BA Parks, L Jiang, PM Thomas, CD Wenger, MJ Roth, MT Boyne, ...
Analytical chemistry 79 (21), 7984-7991, 2007
Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes
PA Grimsrud, D den Os, CD Wenger, DL Swaney, D Schwartz, ...
Plant physiology 152 (1), 19-28, 2010
RNA–protein analysis using a conditional CRISPR nuclease
HY Lee, RE Haurwitz, A Apffel, K Zhou, B Smart, CD Wenger, S Laderman, ...
Proceedings of the National Academy of Sciences 110 (14), 5416-5421, 2013
Global post-translational modification discovery
Q Li, MR Shortreed, CD Wenger, BL Frey, LV Schaffer, M Scalf, LM Smith
Journal of proteome research 16 (4), 1383-1390, 2017
Post-acquisition ETD spectral processing for increased peptide identifications
DM Good, CD Wenger, GC McAlister, DL Bai, DF Hunt, JJ Coon
Journal of the American Society for Mass Spectrometry 20, 1435-1440, 2009
Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval
MT Boyne, BA Garcia, M Li, L Zamdborg, CD Wenger, S Babai, ...
Journal of proteome research 8 (1), 374-379, 2009
Amine-reactive neutron-encoded labels for highly plexed proteomic quantitation
AS Hebert, AE Merrill, JA Stefely, DJ Bailey, CD Wenger, MS Westphall, ...
Molecular & Cellular Proteomics 12 (11), 3360-3369, 2013
Instant spectral assignment for advanced decision tree-driven mass spectrometry
DJ Bailey, CM Rose, GC McAlister, J Brumbaugh, P Yu, CD Wenger, ...
Proceedings of the National Academy of Sciences 109 (22), 8411-8416, 2012
Global identification of protein post-translational modifications in a single-pass database search
MR Shortreed, CD Wenger, BL Frey, GM Sheynkman, M Scalf, MP Keller, ...
Journal of proteome research 14 (11), 4714-4720, 2015
Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification
GC McAlister, D Phanstiel, CD Wenger, MV Lee, JJ Coon
Analytical chemistry 82 (1), 316-322, 2010
Plotgardener: cultivating precise multi-panel figures in R
NE Kramer, ES Davis, CD Wenger, EM Deoudes, SM Parker, MI Love, ...
Bioinformatics 38 (7), 2042-2045, 2022
Characterization of Proteomic and Metabolomic Responses to Dietary Factors and Supplements1
J Astle, JT Ferguson, JB German, GG Harrigan, NL Kelleher, T Kodadek, ...
The Journal of nutrition 137 (12), 2787-2793, 2007
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