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Dawie van Niekerk
Dawie van Niekerk
Lecturer of Systems Biology, Stellenbosch University
Verified email at sun.ac.za - Homepage
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Year
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research
K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ...
Nucleic acids research 45 (D1), D404-D407, 2017
1212017
Sustained glycolytic oscillations in individual isolated yeast cells
AK Gustavsson, DD van Niekerk, CB Adiels, FB du Preez, M Goksör, ...
The FEBS journal 279 (16), 2837-2847, 2012
772012
A combined experimental and modelling approach for the Weimberg pathway optimisation.
L Shen, M Kohlhaas, J Enoki, R Meier, B Schönenberger, R Wohlgemuth, ...
Nature Communications 11 (1), 1098, 2020
542020
Construction and validation of a detailed kinetic model of glycolysis in Plasmodium falciparum
G Penkler, F Du Toit, W Adams, M Rautenbach, DC Palm, ...
The FEBS journal 282 (8), 1481-1511, 2015
542015
Targeting glycolysis in the malaria parasite Plasmodium falciparum
DD van Niekerk, GP Penkler, F du Toit, JL Snoep
The FEBS journal 283 (4), 634-646, 2016
512016
Allosteric regulation of phosphofructokinase controls the emergence of glycolytic oscillations in isolated yeast cells
AK Gustavsson, DD van Niekerk, CB Adiels, B Kooi, M Goksör, JL Snoep
The FEBS journal 281 (12), 2784-2793, 2014
422014
From steady‐state to synchronized yeast glycolytic oscillations I: model construction
FB du Preez, DD van Niekerk, B Kooi, JM Rohwer, JL Snoep
The FEBS journal 279 (16), 2810-2822, 2012
412012
From steady‐state to synchronized yeast glycolytic oscillations II: model validation
FB du Preez, DD van Niekerk, JL Snoep
The FEBS journal 279 (16), 2823-2836, 2012
332012
The JWS online simulation database
M Peters, JJ Eicher, DD van Niekerk, D Waltemath, JL Snoep
Bioinformatics 33 (10), 1589-1590, 2017
292017
Strange-particle production via the weak interaction
GB Adera, BIS Van Der Ventel, DD Van Niekerk, T Mart
Physical Review C 82 (2), 025501, 2010
272010
Heterogeneity of glycolytic oscillatory behaviour in individual yeast cells
AK Gustavsson, DD van Niekerk, CB Adiels, M Goksör, JL Snoep
FEBS letters 588 (1), 3-7, 2014
182014
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research, gkac331, 2022
162022
Intercellular communication induces glycolytic synchronization waves between individually oscillating cells
CB Mojica-Benavides, Martin and van Niekerk, David D. and Mijalkov, Mite and ...
Proceedings of the National Academy of Sciences 118 (6), e2010075118, 2021
142021
Quantitative analysis of drug effects at the whole-body level: a case study for glucose metabolism in malaria patients
JL Snoep, K Green, J Eicher, DC Palm, G Penkler, F du Toit, N Walters, ...
Biochemical Society Transactions 43 (6), 1157-1163, 2015
82015
Phosphofructokinase controls the acetaldehyde-induced phase shift in isolated yeast glycolytic oscillators
DD Van Niekerk, AK Gustavsson, M Mojica-Benavides, CB Adiels, ...
Biochemical Journal 476 (2), 353-363, 2019
72019
Cyclin CLB2 mRNA localization determines efficient protein synthesis to orchestrate bud growth and cell cycle progression
E Tutucci, A Maekiniemi, JL Snoep, M Seiler, K van Rossum, ...
bioRxiv, 2022
42022
Relativistic description of inclusive quasielastic proton-nucleus scattering with relativistic distorted-wave impulse approximation and random-phase approximation
DD Van Niekerk, BIS Van Der Ventel, NP Titus, GC Hillhouse
Physical Review C 83 (4), 044607, 2011
42011
Relativistic distorted-wave analysis of quasielastic proton-nucleus scattering
NP Titus, BIS Van Der Ventel, DD Van Niekerk, GC Hillhouse
Physical Review C 83 (4), 044616, 2011
32011
Inhibitor titrations reveal low control of glyceraldehyde 3-phosphate dehydrogenase and high control of hexokinase on glycolytic flux in an aggressive triple-negative breast …
T Kouril, C October, S Hollocks, C Odendaal, DD van Niekerk, JL Snoep
Biosystems 231, 104969, 2023
22023
Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study
S Horn, JL Snoep, DD van Niekerk
BMC Bioinformatics 22 (1), 1-21, 2021
22021
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Articles 1–20