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Luis Pedro Coelho
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Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 2015
17912015
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ...
Mol Biol Evol, msx148, 2017
15412017
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
9322018
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M G÷nen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
6352014
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature, 2016
5372016
Towards standards for human fecal sample processing in metagenomic studies.
PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ...
Nature biotechnology, 2017
5102017
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
4842019
Metagenomic species profiling using universal phylogenetic marker genes
S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ...
Nature methods 10 (12), 1196-1199, 2013
4372013
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-na´ve Parkinson’s disease patients
JR Bedarf, F Hildebrand, LP Coelho, S Sunagawa, M Bahram, F Goeser, ...
Genome medicine 9 (1), 1-13, 2017
3892017
Recovery of gut microbiota of healthy adults following antibiotic exposure
A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ...
Nature microbiology 3 (11), 1255-1265, 2018
3662018
Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection
P Liehl, V Zuzarte-LuÝs, J Chan, T Zillinger, F Baptista, D Carapau, ...
Nature medicine 20 (1), 47-53, 2014
2632014
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
2432014
Nuclear segmentation in microscope cell images: a hand-segmented dataset and comparison of algorithms
LP Coelho, A Shariff, RF Murphy
Biomedical Imaging: From Nano to Macro, 2009. ISBI'09. IEEE Internationalá…, 2009
2272009
Mahotas: Open source software for scriptable computer vision
LP Coelho
Journal of Open Research Software 1, e3, 2013
2212013
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
2142019
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature Communications 10 (1), 1014, 2019
2132019
Selective maternal seeding and environment shape the human gut microbiome
K Korpela, PI Costea, LP Coelho, S Kandels-Lewis, G Willemsen, ...
Genome Research, gr. 233940.117, 2018
2112018
Global trends in marine plankton diversity across kingdoms of life
FM Ibarbalz, N Henry, MC BrandŃo, S Martini, G Busseni, H Byrne, ...
Cell 179 (5), 1084-1097. e21, 2019
1842019
Similarity of the dog and human gut microbiomes in gene content and response to diet
LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ...
Microbiome 6 (1), 72, 2018
1722018
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ...
Cell 179 (5), 1068-1083. e21, 2019
1622019
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